Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00710 and PS417_00715 overlap by 4 nucleotides PS417_00715 and PS417_00720 overlap by 4 nucleotides PS417_00720 and PS417_00725 overlap by 4 nucleotides
PS417_00710: PS417_00710 - fusaric acid resistance protein, at 147,520 to 149,598
_00710
PS417_00715: PS417_00715 - required for octanoate transport, together with NodT, MFP, and FUSC proteins (PS417_00725, PS417_00720, PS417_00710) <small>(from data)</small>, at 149,595 to 149,804
_00715
PS417_00720: PS417_00720 - membrane protein, at 149,801 to 150,691
_00720
PS417_00725: PS417_00725 - RND transporter, at 150,688 to 152,130
_00725
Position (kb) 149
150
151 Strain fitness (log2 ratio) -2
-1
0
1
2 at 148.823 kb on - strand, within PS417_00710 at 149.300 kb on - strand, within PS417_00710 at 149.595 kb on - strand at 149.657 kb on + strand, within PS417_00715 at 149.657 kb on + strand, within PS417_00715 at 149.657 kb on + strand, within PS417_00715 at 149.658 kb on - strand, within PS417_00715 at 149.658 kb on - strand at 149.658 kb on - strand, within PS417_00715 at 149.661 kb on + strand, within PS417_00715 at 149.661 kb on + strand, within PS417_00715 at 149.661 kb on + strand, within PS417_00715 at 149.661 kb on + strand, within PS417_00715 at 149.662 kb on - strand, within PS417_00715 at 149.662 kb on - strand, within PS417_00715 at 149.662 kb on - strand, within PS417_00715 at 149.662 kb on - strand, within PS417_00715 at 149.662 kb on - strand, within PS417_00715 at 149.662 kb on - strand, within PS417_00715 at 149.662 kb on - strand, within PS417_00715 at 149.662 kb on - strand, within PS417_00715 at 149.709 kb on + strand, within PS417_00715 at 149.891 kb on + strand, within PS417_00720 at 149.891 kb on + strand, within PS417_00720 at 149.891 kb on + strand at 149.891 kb on + strand, within PS417_00720 at 149.891 kb on + strand, within PS417_00720 at 149.892 kb on - strand, within PS417_00720 at 149.892 kb on - strand, within PS417_00720 at 149.892 kb on - strand, within PS417_00720 at 149.892 kb on - strand, within PS417_00720 at 149.894 kb on + strand, within PS417_00720 at 149.894 kb on + strand, within PS417_00720 at 149.894 kb on + strand, within PS417_00720 at 149.894 kb on + strand, within PS417_00720 at 149.894 kb on + strand, within PS417_00720 at 150.670 kb on + strand at 150.757 kb on + strand at 150.772 kb on - strand at 150.830 kb on + strand at 150.830 kb on + strand at 150.831 kb on - strand at 150.831 kb on - strand at 150.868 kb on + strand, within PS417_00725 at 150.868 kb on + strand, within PS417_00725 at 150.868 kb on + strand, within PS417_00725 at 150.869 kb on - strand, within PS417_00725 at 150.961 kb on + strand, within PS417_00725 at 151.375 kb on + strand, within PS417_00725 at 151.376 kb on - strand, within PS417_00725 at 151.376 kb on - strand, within PS417_00725 at 151.376 kb on - strand, within PS417_00725
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 148,823 - PS417_00710 0.63 -0.2 149,300 - PS417_00710 0.86 +0.0 149,595 - -0.4 149,657 + PS417_00715 0.30 +0.7 149,657 + PS417_00715 0.30 +0.2 149,657 + PS417_00715 0.30 +0.8 149,658 - PS417_00715 0.30 -1.1 149,658 - +1.8 149,658 - PS417_00715 0.30 -0.2 149,661 + PS417_00715 0.31 -0.4 149,661 + PS417_00715 0.31 +1.7 149,661 + PS417_00715 0.31 -1.1 149,661 + PS417_00715 0.31 -1.4 149,662 - PS417_00715 0.32 -0.4 149,662 - PS417_00715 0.32 -0.8 149,662 - PS417_00715 0.32 +0.2 149,662 - PS417_00715 0.32 -0.2 149,662 - PS417_00715 0.32 +0.4 149,662 - PS417_00715 0.32 -0.8 149,662 - PS417_00715 0.32 +0.8 149,662 - PS417_00715 0.32 -0.1 149,709 + PS417_00715 0.54 +0.0 149,891 + PS417_00720 0.10 -0.4 149,891 + PS417_00720 0.10 -1.0 149,891 + +0.4 149,891 + PS417_00720 0.10 +0.1 149,891 + PS417_00720 0.10 -0.2 149,892 - PS417_00720 0.10 -0.2 149,892 - PS417_00720 0.10 +1.6 149,892 - PS417_00720 0.10 +0.2 149,892 - PS417_00720 0.10 +0.5 149,894 + PS417_00720 0.10 +1.8 149,894 + PS417_00720 0.10 +1.0 149,894 + PS417_00720 0.10 -2.5 149,894 + PS417_00720 0.10 -0.2 149,894 + PS417_00720 0.10 +0.2 150,670 + +0.3 150,757 + -0.6 150,772 - +0.1 150,830 + +1.2 150,830 + +1.1 150,831 - -0.1 150,831 - -0.2 150,868 + PS417_00725 0.12 -0.9 150,868 + PS417_00725 0.12 +0.8 150,868 + PS417_00725 0.12 +1.8 150,869 - PS417_00725 0.13 +0.5 150,961 + PS417_00725 0.19 -0.4 151,375 + PS417_00725 0.48 -0.3 151,376 - PS417_00725 0.48 +2.0 151,376 - PS417_00725 0.48 -1.9 151,376 - PS417_00725 0.48 +1.4
Or see this region's nucleotide sequence