Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00665 and PS417_00670 are separated by 74 nucleotides PS417_00670 and PS417_00675 overlap by 4 nucleotides
PS417_00665: PS417_00665 - RND transporter, at 136,301 to 137,746
_00665
PS417_00670: PS417_00670 - RNA polymerase sigma factor, at 137,821 to 138,330
_00670
PS417_00675: PS417_00675 - iron dicitrate transport regulator FecR, at 138,327 to 139,277
_00675
Position (kb)
137
138
139 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 136.848 kb on - strand, within PS417_00665 at 136.867 kb on - strand, within PS417_00665 at 136.867 kb on - strand, within PS417_00665 at 137.000 kb on - strand, within PS417_00665 at 137.433 kb on - strand, within PS417_00665 at 137.433 kb on - strand, within PS417_00665 at 137.433 kb on - strand, within PS417_00665 at 137.487 kb on - strand, within PS417_00665 at 137.570 kb on + strand, within PS417_00665 at 137.571 kb on - strand, within PS417_00665 at 137.687 kb on + strand at 137.688 kb on - strand at 137.864 kb on - strand at 138.004 kb on + strand, within PS417_00670 at 138.070 kb on + strand, within PS417_00670 at 138.071 kb on - strand, within PS417_00670 at 138.204 kb on - strand, within PS417_00670 at 138.280 kb on + strand at 138.280 kb on + strand at 138.280 kb on + strand at 138.280 kb on + strand at 138.280 kb on + strand at 138.281 kb on - strand at 138.281 kb on - strand at 138.281 kb on - strand at 138.616 kb on - strand, within PS417_00675 at 139.232 kb on - strand at 139.232 kb on - strand at 139.323 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 136,848 - PS417_00665 0.38 -0.0 136,867 - PS417_00665 0.39 +0.8 136,867 - PS417_00665 0.39 +0.8 137,000 - PS417_00665 0.48 +2.7 137,433 - PS417_00665 0.78 -0.2 137,433 - PS417_00665 0.78 +0.4 137,433 - PS417_00665 0.78 +0.1 137,487 - PS417_00665 0.82 -2.1 137,570 + PS417_00665 0.88 +0.2 137,571 - PS417_00665 0.88 -0.7 137,687 + +4.7 137,688 - +0.0 137,864 - -0.4 138,004 + PS417_00670 0.36 +0.1 138,070 + PS417_00670 0.49 +2.2 138,071 - PS417_00670 0.49 +1.1 138,204 - PS417_00670 0.75 -0.3 138,280 + +2.4 138,280 + +0.4 138,280 + +0.4 138,280 + +2.4 138,280 + -0.7 138,281 - +0.4 138,281 - -1.2 138,281 - -0.9 138,616 - PS417_00675 0.30 -0.3 139,232 - -0.6 139,232 - -0.3 139,323 + -1.2
Or see this region's nucleotide sequence