Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06080 and PS417_06085 are separated by 27 nucleotides PS417_06085 and PS417_06090 are separated by 27 nucleotides PS417_06090 and PS417_06095 are separated by 3 nucleotides PS417_06095 and PS417_06100 are separated by 96 nucleotides
PS417_06080: PS417_06080 - hypothetical protein, at 1,348,423 to 1,349,283
_06080
PS417_06085: PS417_06085 - 2-methylisocitrate lyase, at 1,349,311 to 1,350,138
_06085
PS417_06090: PS417_06090 - extensin, at 1,350,166 to 1,350,840
_06090
PS417_06095: PS417_06095 - energy transducer TonB, at 1,350,844 to 1,351,464
_06095
PS417_06100: PS417_06100 - SAM-dependent methyltransferase, at 1,351,561 to 1,352,343
_06100
Position (kb)
1350
1351 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1349.690 kb on - strand, within PS417_06085 at 1349.863 kb on + strand, within PS417_06085 at 1349.863 kb on + strand, within PS417_06085 at 1349.936 kb on + strand, within PS417_06085 at 1349.937 kb on - strand, within PS417_06085 at 1349.937 kb on - strand, within PS417_06085 at 1350.064 kb on + strand at 1350.064 kb on + strand at 1350.065 kb on - strand at 1350.065 kb on - strand at 1350.065 kb on - strand at 1350.408 kb on + strand, within PS417_06090 at 1350.560 kb on + strand, within PS417_06090 at 1350.560 kb on + strand, within PS417_06090 at 1350.582 kb on + strand, within PS417_06090 at 1350.583 kb on - strand, within PS417_06090 at 1350.583 kb on - strand, within PS417_06090 at 1350.583 kb on - strand at 1350.586 kb on + strand, within PS417_06090 at 1350.586 kb on + strand, within PS417_06090 at 1350.586 kb on + strand, within PS417_06090 at 1350.586 kb on + strand, within PS417_06090 at 1350.586 kb on + strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.778 kb on + strand at 1351.398 kb on + strand, within PS417_06095 at 1351.399 kb on - strand, within PS417_06095 at 1351.432 kb on + strand at 1351.433 kb on - strand at 1351.496 kb on + strand at 1351.537 kb on + strand at 1351.541 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 1,349,690 - PS417_06085 0.46 -0.1 1,349,863 + PS417_06085 0.67 -0.1 1,349,863 + PS417_06085 0.67 +0.3 1,349,936 + PS417_06085 0.75 +0.1 1,349,937 - PS417_06085 0.76 -0.7 1,349,937 - PS417_06085 0.76 +0.2 1,350,064 + -0.3 1,350,064 + -0.1 1,350,065 - +0.1 1,350,065 - -0.7 1,350,065 - +0.9 1,350,408 + PS417_06090 0.36 +0.2 1,350,560 + PS417_06090 0.58 -0.5 1,350,560 + PS417_06090 0.58 -0.5 1,350,582 + PS417_06090 0.62 +0.4 1,350,583 - PS417_06090 0.62 -0.0 1,350,583 - PS417_06090 0.62 -0.1 1,350,583 - +3.3 1,350,586 + PS417_06090 0.62 +0.6 1,350,586 + PS417_06090 0.62 -1.9 1,350,586 + PS417_06090 0.62 +1.6 1,350,586 + PS417_06090 0.62 +3.3 1,350,586 + PS417_06090 0.62 -0.5 1,350,587 - PS417_06090 0.62 -0.6 1,350,587 - PS417_06090 0.62 -0.9 1,350,587 - PS417_06090 0.62 +1.4 1,350,587 - PS417_06090 0.62 +0.6 1,350,587 - PS417_06090 0.62 -0.9 1,350,587 - PS417_06090 0.62 +1.5 1,350,587 - PS417_06090 0.62 +0.9 1,350,587 - PS417_06090 0.62 -0.3 1,350,587 - PS417_06090 0.62 +1.2 1,350,778 + +0.7 1,351,398 + PS417_06095 0.89 -0.3 1,351,399 - PS417_06095 0.89 +1.4 1,351,432 + +0.7 1,351,433 - +0.5 1,351,496 + +1.1 1,351,537 + +0.7 1,351,541 - -0.5
Or see this region's nucleotide sequence