Strain Fitness in Pseudomonas simiae WCS417 around PS417_05415
Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2'-Deoxyinosine 5 mM (C) |
---|---|---|---|---|---|
remove | |||||
1,213,628 | + | +2.3 | |||
1,213,628 | + | PS417_05410 | 0.55 | -0.1 | |
1,213,891 | - | PS417_05410 | 0.78 | -1.0 | |
1,213,891 | - | PS417_05410 | 0.78 | +0.0 | |
1,213,902 | - | PS417_05410 | 0.79 | +1.3 | |
1,214,165 | - | -1.0 | |||
1,214,175 | + | +1.8 | |||
1,214,207 | - | -3.0 | |||
1,214,250 | - | -0.3 | |||
1,214,250 | - | -1.4 | |||
1,216,092 | + | -0.7 | |||
1,216,118 | - | -0.2 | |||
1,216,118 | - | +0.2 | |||
1,216,272 | - | +0.9 | |||
1,216,293 | - | +0.5 | |||
1,216,585 | + | PS417_05420 | 0.28 | -1.0 | |
1,216,585 | + | PS417_05420 | 0.28 | +0.9 | |
1,216,586 | - | PS417_05420 | 0.28 | -0.0 | |
1,216,586 | - | PS417_05420 | 0.28 | +0.9 | |
1,216,698 | + | PS417_05420 | 0.36 | -3.4 | |
1,216,880 | - | PS417_05420 | 0.49 | -0.6 | |
1,216,880 | - | PS417_05420 | 0.49 | +1.1 | |
1,217,091 | + | PS417_05420 | 0.64 | +1.8 | |
1,217,091 | + | PS417_05420 | 0.64 | -0.2 | |
1,217,091 | + | PS417_05420 | 0.64 | +0.5 | |
1,217,092 | - | PS417_05420 | 0.64 | +0.0 | |
1,217,092 | - | PS417_05420 | 0.64 | +0.5 |
Or see this region's nucleotide sequence