Strain Fitness in Pseudomonas simiae WCS417 around PS417_05415

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05410 and PS417_05415 are separated by 324 nucleotidesPS417_05415 and PS417_05420 are separated by 104 nucleotides PS417_05410: PS417_05410 - membrane protein, at 1,213,000 to 1,214,148 _05410 PS417_05415: PS417_05415 - glutamate synthase, at 1,214,473 to 1,216,092 _05415 PS417_05420: PS417_05420 - ATPase, at 1,216,197 to 1,217,597 _05420 Position (kb) 1214 1215 1216 1217Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1213.628 kb on + strandat 1213.628 kb on + strand, within PS417_05410at 1213.891 kb on - strand, within PS417_05410at 1213.891 kb on - strand, within PS417_05410at 1213.902 kb on - strand, within PS417_05410at 1214.165 kb on - strandat 1214.175 kb on + strandat 1214.207 kb on - strandat 1214.250 kb on - strandat 1214.250 kb on - strandat 1216.092 kb on + strandat 1216.118 kb on - strandat 1216.118 kb on - strandat 1216.272 kb on - strandat 1216.293 kb on - strandat 1216.585 kb on + strand, within PS417_05420at 1216.585 kb on + strand, within PS417_05420at 1216.586 kb on - strand, within PS417_05420at 1216.586 kb on - strand, within PS417_05420at 1216.698 kb on + strand, within PS417_05420at 1216.880 kb on - strand, within PS417_05420at 1216.880 kb on - strand, within PS417_05420at 1217.091 kb on + strand, within PS417_05420at 1217.091 kb on + strand, within PS417_05420at 1217.091 kb on + strand, within PS417_05420at 1217.092 kb on - strand, within PS417_05420at 1217.092 kb on - strand, within PS417_05420

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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1,213,628 + +2.3
1,213,628 + PS417_05410 0.55 -0.1
1,213,891 - PS417_05410 0.78 -1.0
1,213,891 - PS417_05410 0.78 +0.0
1,213,902 - PS417_05410 0.79 +1.3
1,214,165 - -1.0
1,214,175 + +1.8
1,214,207 - -3.0
1,214,250 - -0.3
1,214,250 - -1.4
1,216,092 + -0.7
1,216,118 - -0.2
1,216,118 - +0.2
1,216,272 - +0.9
1,216,293 - +0.5
1,216,585 + PS417_05420 0.28 -1.0
1,216,585 + PS417_05420 0.28 +0.9
1,216,586 - PS417_05420 0.28 -0.0
1,216,586 - PS417_05420 0.28 +0.9
1,216,698 + PS417_05420 0.36 -3.4
1,216,880 - PS417_05420 0.49 -0.6
1,216,880 - PS417_05420 0.49 +1.1
1,217,091 + PS417_05420 0.64 +1.8
1,217,091 + PS417_05420 0.64 -0.2
1,217,091 + PS417_05420 0.64 +0.5
1,217,092 - PS417_05420 0.64 +0.0
1,217,092 - PS417_05420 0.64 +0.5

Or see this region's nucleotide sequence