Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05090 and PS417_05095 are separated by 91 nucleotides PS417_05095 and PS417_05100 overlap by 4 nucleotides PS417_05100 and PS417_05105 are separated by 170 nucleotides PS417_05105 and PS417_05110 overlap by 4 nucleotides
PS417_05090: PS417_05090 - ferric citrate outer membrane transporter (fecA) (from data) , at 1,130,585 to 1,132,921
_05090
PS417_05095: PS417_05095 - membrane protein, at 1,133,013 to 1,133,954
_05095
PS417_05100: PS417_05100 - RNA polymerase sigma factor, at 1,133,951 to 1,134,439
_05100
PS417_05105: PS417_05105 - membrane protein, at 1,134,610 to 1,134,912
_05105
PS417_05110: PS417_05110 - peptidase, at 1,134,909 to 1,136,483
_05110
Position (kb)
1133
1134 Strain fitness (log2 ratio)
-2
-1
0
1 at 1132.247 kb on - strand, within PS417_05090 at 1132.421 kb on + strand, within PS417_05090 at 1132.615 kb on - strand, within PS417_05090 at 1132.689 kb on + strand at 1132.694 kb on - strand at 1132.875 kb on - strand at 1133.119 kb on + strand, within PS417_05095 at 1133.344 kb on + strand, within PS417_05095 at 1133.344 kb on + strand, within PS417_05095 at 1133.394 kb on - strand, within PS417_05095 at 1133.657 kb on + strand, within PS417_05095 at 1133.658 kb on - strand at 1133.658 kb on - strand, within PS417_05095 at 1133.658 kb on - strand, within PS417_05095 at 1133.954 kb on + strand at 1134.016 kb on + strand, within PS417_05100 at 1134.016 kb on + strand, within PS417_05100 at 1134.202 kb on - strand, within PS417_05100 at 1134.408 kb on + strand at 1134.408 kb on + strand at 1134.408 kb on + strand at 1134.409 kb on - strand at 1134.471 kb on - strand at 1134.641 kb on - strand, within PS417_05105 at 1134.787 kb on + strand, within PS417_05105 at 1134.787 kb on + strand, within PS417_05105 at 1134.788 kb on - strand, within PS417_05105 at 1134.788 kb on - strand, within PS417_05105
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 1,132,247 - PS417_05090 0.71 -0.3 1,132,421 + PS417_05090 0.79 -0.4 1,132,615 - PS417_05090 0.87 +1.4 1,132,689 + +0.6 1,132,694 - -1.2 1,132,875 - +0.0 1,133,119 + PS417_05095 0.11 -1.1 1,133,344 + PS417_05095 0.35 -0.9 1,133,344 + PS417_05095 0.35 -1.0 1,133,394 - PS417_05095 0.40 +0.2 1,133,657 + PS417_05095 0.68 -1.0 1,133,658 - +0.0 1,133,658 - PS417_05095 0.68 +0.6 1,133,658 - PS417_05095 0.68 -0.4 1,133,954 + -1.0 1,134,016 + PS417_05100 0.13 +0.6 1,134,016 + PS417_05100 0.13 -0.6 1,134,202 - PS417_05100 0.51 +1.7 1,134,408 + -1.9 1,134,408 + +1.4 1,134,408 + -1.5 1,134,409 - +0.2 1,134,471 - +0.1 1,134,641 - PS417_05105 0.10 +0.6 1,134,787 + PS417_05105 0.58 -0.5 1,134,787 + PS417_05105 0.58 -0.9 1,134,788 - PS417_05105 0.59 -0.6 1,134,788 - PS417_05105 0.59 -0.3
Or see this region's nucleotide sequence