Strain Fitness in Escherichia coli BW25113 around b1435

Experiment: RB51m1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntb1433 and ydcN are separated by 91 nucleotidesydcN and ydcP are separated by 72 nucleotidesydcP and yncJ are separated by 91 nucleotidesyncJ and yncN are separated by 221 nucleotidesyncN and ydcQ are separated by 45 nucleotides b1433: b1433 - putative membrane transport protein (VIMSS), at 1,502,929 to 1,504,104 b1433 b1434: ydcN - predicted DNA-binding transcriptional regulator (NCBI), at 1,504,196 to 1,504,732 ydcN b1435: ydcP - putative collagenase (VIMSS), at 1,504,805 to 1,506,766 ydcP b1436: yncJ - hypothetical protein (NCBI), at 1,506,858 to 1,507,088 yncJ b4532: yncN - orf, hypothetical protein (VIMSS), at 1,507,310 to 1,507,486 yncN b1438: ydcQ - predicted DNA-binding transcriptional regulator (RefSeq), at 1,507,532 to 1,507,948 ydcQ Position (kb) 1504 1505 1506 1507Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1503.832 kb on + strand, within b1433at 1503.890 kb on - strand, within b1433at 1503.890 kb on - strand, within b1433at 1504.026 kb on + strandat 1504.588 kb on + strand, within ydcNat 1504.607 kb on - strand, within ydcNat 1504.721 kb on - strandat 1504.837 kb on - strandat 1504.884 kb on + strandat 1505.058 kb on + strand, within ydcPat 1505.064 kb on - strand, within ydcPat 1505.068 kb on + strand, within ydcPat 1505.079 kb on + strand, within ydcPat 1505.146 kb on + strand, within ydcPat 1505.560 kb on + strand, within ydcPat 1506.106 kb on - strand, within ydcPat 1506.258 kb on - strand, within ydcPat 1506.258 kb on - strand, within ydcPat 1506.466 kb on + strand, within ydcPat 1506.466 kb on + strand, within ydcPat 1506.484 kb on - strand, within ydcPat 1506.484 kb on - strand, within ydcPat 1506.495 kb on - strand, within ydcPat 1506.768 kb on - strandat 1506.768 kb on - strandat 1507.385 kb on - strand, within yncNat 1507.407 kb on + strand, within yncNat 1507.450 kb on + strand, within yncNat 1507.631 kb on + strand, within ydcQat 1507.675 kb on + strand, within ydcQat 1507.702 kb on + strand, within ydcQat 1507.710 kb on - strand, within ydcQat 1507.761 kb on + strand, within ydcQ

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Per-strain Table

Position Strand Gene LocusTag Fraction RB51m1
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1,503,832 + b1433 b1433 0.77 +0.2
1,503,890 - b1433 b1433 0.82 +1.2
1,503,890 - b1433 b1433 0.82 +1.8
1,504,026 + +1.2
1,504,588 + ydcN b1434 0.73 +2.5
1,504,607 - ydcN b1434 0.77 -0.6
1,504,721 - -3.3
1,504,837 - +0.5
1,504,884 + -0.4
1,505,058 + ydcP b1435 0.13 -0.2
1,505,064 - ydcP b1435 0.13 -0.8
1,505,068 + ydcP b1435 0.13 -0.7
1,505,079 + ydcP b1435 0.14 -0.8
1,505,146 + ydcP b1435 0.17 -2.7
1,505,560 + ydcP b1435 0.38 -0.9
1,506,106 - ydcP b1435 0.66 +0.5
1,506,258 - ydcP b1435 0.74 -1.4
1,506,258 - ydcP b1435 0.74 +0.9
1,506,466 + ydcP b1435 0.85 -2.9
1,506,466 + ydcP b1435 0.85 -2.9
1,506,484 - ydcP b1435 0.86 -1.5
1,506,484 - ydcP b1435 0.86 -3.4
1,506,495 - ydcP b1435 0.86 -2.5
1,506,768 - +0.7
1,506,768 - -0.7
1,507,385 - yncN b4532 0.42 -0.3
1,507,407 + yncN b4532 0.55 -0.2
1,507,450 + yncN b4532 0.79 -4.2
1,507,631 + ydcQ b1438 0.24 -1.0
1,507,675 + ydcQ b1438 0.34 -3.8
1,507,702 + ydcQ b1438 0.41 -1.4
1,507,710 - ydcQ b1438 0.43 -3.0
1,507,761 + ydcQ b1438 0.55 -1.7

Or see this region's nucleotide sequence