Experiment: RB51m1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b1433 and ydcN are separated by 91 nucleotides ydcN and ydcP are separated by 72 nucleotides ydcP and yncJ are separated by 91 nucleotides yncJ and yncN are separated by 221 nucleotides yncN and ydcQ are separated by 45 nucleotides
b1433: b1433 - putative membrane transport protein (VIMSS), at 1,502,929 to 1,504,104
b1433
b1434: ydcN - predicted DNA-binding transcriptional regulator (NCBI), at 1,504,196 to 1,504,732
ydcN
b1435: ydcP - putative collagenase (VIMSS), at 1,504,805 to 1,506,766
ydcP
b1436: yncJ - hypothetical protein (NCBI), at 1,506,858 to 1,507,088
yncJ
b4532: yncN - orf, hypothetical protein (VIMSS), at 1,507,310 to 1,507,486
yncN
b1438: ydcQ - predicted DNA-binding transcriptional regulator (RefSeq), at 1,507,532 to 1,507,948
ydcQ
Position (kb)
1504
1505
1506
1507 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1503.832 kb on + strand, within b1433 at 1503.890 kb on - strand, within b1433 at 1503.890 kb on - strand, within b1433 at 1504.026 kb on + strand at 1504.588 kb on + strand, within ydcN at 1504.607 kb on - strand, within ydcN at 1504.721 kb on - strand at 1504.837 kb on - strand at 1504.884 kb on + strand at 1505.058 kb on + strand, within ydcP at 1505.064 kb on - strand, within ydcP at 1505.068 kb on + strand, within ydcP at 1505.079 kb on + strand, within ydcP at 1505.146 kb on + strand, within ydcP at 1505.560 kb on + strand, within ydcP at 1506.106 kb on - strand, within ydcP at 1506.258 kb on - strand, within ydcP at 1506.258 kb on - strand, within ydcP at 1506.466 kb on + strand, within ydcP at 1506.466 kb on + strand, within ydcP at 1506.484 kb on - strand, within ydcP at 1506.484 kb on - strand, within ydcP at 1506.495 kb on - strand, within ydcP at 1506.768 kb on - strand at 1506.768 kb on - strand at 1507.385 kb on - strand, within yncN at 1507.407 kb on + strand, within yncN at 1507.450 kb on + strand, within yncN at 1507.631 kb on + strand, within ydcQ at 1507.675 kb on + strand, within ydcQ at 1507.702 kb on + strand, within ydcQ at 1507.710 kb on - strand, within ydcQ at 1507.761 kb on + strand, within ydcQ
Per-strain Table
Position Strand Gene LocusTag Fraction RB51m1 remove 1,503,832 + b1433 b1433 0.77 +0.2 1,503,890 - b1433 b1433 0.82 +1.2 1,503,890 - b1433 b1433 0.82 +1.8 1,504,026 + +1.2 1,504,588 + ydcN b1434 0.73 +2.5 1,504,607 - ydcN b1434 0.77 -0.6 1,504,721 - -3.3 1,504,837 - +0.5 1,504,884 + -0.4 1,505,058 + ydcP b1435 0.13 -0.2 1,505,064 - ydcP b1435 0.13 -0.8 1,505,068 + ydcP b1435 0.13 -0.7 1,505,079 + ydcP b1435 0.14 -0.8 1,505,146 + ydcP b1435 0.17 -2.7 1,505,560 + ydcP b1435 0.38 -0.9 1,506,106 - ydcP b1435 0.66 +0.5 1,506,258 - ydcP b1435 0.74 -1.4 1,506,258 - ydcP b1435 0.74 +0.9 1,506,466 + ydcP b1435 0.85 -2.9 1,506,466 + ydcP b1435 0.85 -2.9 1,506,484 - ydcP b1435 0.86 -1.5 1,506,484 - ydcP b1435 0.86 -3.4 1,506,495 - ydcP b1435 0.86 -2.5 1,506,768 - +0.7 1,506,768 - -0.7 1,507,385 - yncN b4532 0.42 -0.3 1,507,407 + yncN b4532 0.55 -0.2 1,507,450 + yncN b4532 0.79 -4.2 1,507,631 + ydcQ b1438 0.24 -1.0 1,507,675 + ydcQ b1438 0.34 -3.8 1,507,702 + ydcQ b1438 0.41 -1.4 1,507,710 - ydcQ b1438 0.43 -3.0 1,507,761 + ydcQ b1438 0.55 -1.7
Or see this region's nucleotide sequence