Strain Fitness in Escherichia coli BL21 around ECD_04132

Experiment: Control_TnD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04131 and ECD_04132 are separated by 62 nucleotidesECD_04132 and ECD_04133 are separated by 23 nucleotides ECD_04131: ECD_04131 - L-idonate and D-gluconate transporter, at 4,402,798 to 4,404,117 _04131 ECD_04132: ECD_04132 - 5-keto-D-gluconate-5-reductase, at 4,404,180 to 4,404,944 _04132 ECD_04133: ECD_04133 - L-idonate 5-dehydrogenase, NAD-binding, at 4,404,968 to 4,405,999 _04133 Position (kb) 4404 4405Strain fitness (log2 ratio) -1 0 1at 4403.205 kb on + strand, within ECD_04131at 4403.206 kb on - strand, within ECD_04131at 4403.232 kb on + strand, within ECD_04131at 4403.233 kb on - strand, within ECD_04131at 4403.233 kb on - strand, within ECD_04131at 4403.247 kb on + strand, within ECD_04131at 4403.278 kb on - strand, within ECD_04131at 4403.305 kb on - strand, within ECD_04131at 4403.305 kb on - strand, within ECD_04131at 4403.316 kb on + strand, within ECD_04131at 4403.317 kb on - strand, within ECD_04131at 4403.370 kb on + strand, within ECD_04131at 4403.475 kb on + strand, within ECD_04131at 4403.483 kb on - strand, within ECD_04131at 4403.494 kb on + strand, within ECD_04131at 4403.494 kb on + strand, within ECD_04131at 4403.559 kb on + strand, within ECD_04131at 4403.560 kb on - strand, within ECD_04131at 4403.560 kb on - strand, within ECD_04131at 4403.581 kb on - strand, within ECD_04131at 4403.588 kb on + strand, within ECD_04131at 4403.705 kb on + strand, within ECD_04131at 4403.706 kb on - strand, within ECD_04131at 4403.706 kb on - strand, within ECD_04131at 4403.731 kb on + strand, within ECD_04131at 4403.732 kb on - strand, within ECD_04131at 4403.732 kb on - strand, within ECD_04131at 4403.732 kb on - strand, within ECD_04131at 4403.740 kb on - strand, within ECD_04131at 4403.743 kb on + strand, within ECD_04131at 4403.743 kb on + strand, within ECD_04131at 4403.743 kb on + strand, within ECD_04131at 4403.744 kb on - strand, within ECD_04131at 4403.868 kb on + strand, within ECD_04131at 4403.970 kb on + strand, within ECD_04131at 4403.971 kb on - strand, within ECD_04131at 4404.076 kb on - strandat 4404.118 kb on - strandat 4404.193 kb on - strandat 4404.357 kb on - strand, within ECD_04132at 4404.404 kb on + strand, within ECD_04132at 4404.518 kb on + strand, within ECD_04132at 4404.519 kb on - strand, within ECD_04132at 4404.521 kb on + strand, within ECD_04132at 4404.669 kb on - strand, within ECD_04132at 4404.708 kb on - strand, within ECD_04132at 4404.749 kb on + strand, within ECD_04132at 4404.851 kb on - strand, within ECD_04132at 4404.948 kb on - strandat 4405.249 kb on + strand, within ECD_04133at 4405.344 kb on - strand, within ECD_04133at 4405.478 kb on - strand, within ECD_04133at 4405.478 kb on - strand, within ECD_04133at 4405.482 kb on - strand, within ECD_04133at 4405.496 kb on + strand, within ECD_04133at 4405.612 kb on + strand, within ECD_04133at 4405.787 kb on - strand, within ECD_04133at 4405.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnD
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4,403,205 + ECD_04131 0.31 -0.3
4,403,206 - ECD_04131 0.31 -0.1
4,403,232 + ECD_04131 0.33 +0.6
4,403,233 - ECD_04131 0.33 -1.5
4,403,233 - ECD_04131 0.33 -1.0
4,403,247 + ECD_04131 0.34 -0.2
4,403,278 - ECD_04131 0.36 +1.0
4,403,305 - ECD_04131 0.38 -0.2
4,403,305 - ECD_04131 0.38 +0.5
4,403,316 + ECD_04131 0.39 -1.3
4,403,317 - ECD_04131 0.39 -1.5
4,403,370 + ECD_04131 0.43 +0.0
4,403,475 + ECD_04131 0.51 -0.3
4,403,483 - ECD_04131 0.52 +0.1
4,403,494 + ECD_04131 0.53 +0.4
4,403,494 + ECD_04131 0.53 +0.2
4,403,559 + ECD_04131 0.58 +0.2
4,403,560 - ECD_04131 0.58 -0.5
4,403,560 - ECD_04131 0.58 +0.4
4,403,581 - ECD_04131 0.59 -0.8
4,403,588 + ECD_04131 0.60 -0.4
4,403,705 + ECD_04131 0.69 -0.3
4,403,706 - ECD_04131 0.69 -0.7
4,403,706 - ECD_04131 0.69 +0.6
4,403,731 + ECD_04131 0.71 +1.3
4,403,732 - ECD_04131 0.71 +0.1
4,403,732 - ECD_04131 0.71 -0.2
4,403,732 - ECD_04131 0.71 -0.3
4,403,740 - ECD_04131 0.71 -0.0
4,403,743 + ECD_04131 0.72 +1.3
4,403,743 + ECD_04131 0.72 -1.4
4,403,743 + ECD_04131 0.72 +0.7
4,403,744 - ECD_04131 0.72 -0.6
4,403,868 + ECD_04131 0.81 -0.4
4,403,970 + ECD_04131 0.89 -0.0
4,403,971 - ECD_04131 0.89 +0.3
4,404,076 - +0.1
4,404,118 - -0.5
4,404,193 - -0.2
4,404,357 - ECD_04132 0.23 +0.6
4,404,404 + ECD_04132 0.29 +0.6
4,404,518 + ECD_04132 0.44 +0.9
4,404,519 - ECD_04132 0.44 +0.6
4,404,521 + ECD_04132 0.45 +0.1
4,404,669 - ECD_04132 0.64 +0.8
4,404,708 - ECD_04132 0.69 +0.1
4,404,749 + ECD_04132 0.74 +0.8
4,404,851 - ECD_04132 0.88 -0.2
4,404,948 - +0.6
4,405,249 + ECD_04133 0.27 +0.1
4,405,344 - ECD_04133 0.36 +0.3
4,405,478 - ECD_04133 0.49 -0.1
4,405,478 - ECD_04133 0.49 +0.0
4,405,482 - ECD_04133 0.50 +0.1
4,405,496 + ECD_04133 0.51 +0.1
4,405,612 + ECD_04133 0.62 -0.0
4,405,787 - ECD_04133 0.79 +1.5
4,405,932 - +1.0

Or see this region's nucleotide sequence