Strain Fitness in Escherichia coli BL21 around ECD_04112

Experiment: Control_TnD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04110 and ECD_04111 are separated by 205 nucleotidesECD_04111 and ECD_04112 are separated by 72 nucleotidesECD_04112 and ECD_04113 are separated by 12 nucleotidesECD_04113 and ECD_04114 are separated by 3 nucleotides ECD_04110: ECD_04110 - magnesium transporter, at 4,379,267 to 4,381,963 _04110 ECD_04111: ECD_04111 - enamine/imine deaminase, reaction intermediate detoxification, at 4,382,169 to 4,382,555 _04111 ECD_04112: ECD_04112 - aspartate carbamoyltransferase, regulatory subunit, at 4,382,628 to 4,383,089 _04112 ECD_04113: ECD_04113 - aspartate carbamoyltransferase, catalytic subunit, at 4,383,102 to 4,384,037 _04113 ECD_04114: ECD_04114 - pyrBI operon leader peptide, at 4,384,041 to 4,384,175 _04114 Position (kb) 4382 4383 4384Strain fitness (log2 ratio) -1 0 1 2at 4381.723 kb on + strandat 4381.724 kb on - strandat 4381.871 kb on + strandat 4381.872 kb on - strandat 4381.904 kb on + strandat 4381.904 kb on + strandat 4381.906 kb on + strandat 4381.906 kb on + strandat 4381.906 kb on + strandat 4381.914 kb on + strandat 4381.914 kb on + strandat 4381.914 kb on + strandat 4381.915 kb on - strandat 4381.937 kb on + strandat 4381.968 kb on + strandat 4382.093 kb on - strandat 4382.134 kb on + strandat 4382.171 kb on - strandat 4382.284 kb on + strand, within ECD_04111at 4382.285 kb on - strand, within ECD_04111at 4382.285 kb on - strand, within ECD_04111at 4382.339 kb on + strand, within ECD_04111at 4382.385 kb on + strand, within ECD_04111at 4382.480 kb on + strand, within ECD_04111at 4382.481 kb on - strand, within ECD_04111at 4382.481 kb on - strand, within ECD_04111at 4382.481 kb on - strand, within ECD_04111at 4382.503 kb on - strand, within ECD_04111at 4382.503 kb on - strand, within ECD_04111at 4382.568 kb on - strandat 4382.598 kb on - strandat 4382.617 kb on - strandat 4382.648 kb on + strandat 4382.671 kb on + strandat 4382.671 kb on + strandat 4382.671 kb on + strandat 4382.747 kb on + strand, within ECD_04112at 4382.825 kb on - strand, within ECD_04112at 4382.825 kb on - strand, within ECD_04112at 4382.840 kb on + strand, within ECD_04112at 4382.861 kb on - strand, within ECD_04112at 4382.861 kb on - strand, within ECD_04112at 4382.877 kb on + strand, within ECD_04112at 4382.878 kb on - strand, within ECD_04112at 4382.878 kb on - strand, within ECD_04112at 4382.946 kb on + strand, within ECD_04112at 4383.008 kb on + strand, within ECD_04112at 4383.029 kb on + strand, within ECD_04112at 4383.040 kb on - strand, within ECD_04112at 4383.040 kb on - strand, within ECD_04112at 4383.053 kb on + strandat 4383.056 kb on + strandat 4383.057 kb on - strandat 4383.057 kb on - strandat 4383.181 kb on + strandat 4383.200 kb on + strand, within ECD_04113at 4383.358 kb on + strand, within ECD_04113at 4383.392 kb on + strand, within ECD_04113at 4383.393 kb on - strand, within ECD_04113at 4383.393 kb on - strand, within ECD_04113at 4383.446 kb on - strand, within ECD_04113at 4383.446 kb on - strand, within ECD_04113at 4383.481 kb on + strand, within ECD_04113at 4383.482 kb on - strand, within ECD_04113at 4383.670 kb on - strand, within ECD_04113at 4383.730 kb on - strand, within ECD_04113at 4383.742 kb on + strand, within ECD_04113at 4383.742 kb on + strand, within ECD_04113at 4383.743 kb on - strand, within ECD_04113at 4383.743 kb on - strand, within ECD_04113at 4383.800 kb on + strand, within ECD_04113at 4384.010 kb on + strandat 4384.010 kb on + strandat 4384.011 kb on - strandat 4384.022 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnD
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4,381,723 + +0.2
4,381,724 - +0.8
4,381,871 + +0.8
4,381,872 - +0.5
4,381,904 + +0.5
4,381,904 + -0.5
4,381,906 + +1.0
4,381,906 + +0.2
4,381,906 + +0.1
4,381,914 + +0.8
4,381,914 + +1.8
4,381,914 + +0.2
4,381,915 - +0.4
4,381,937 + +0.0
4,381,968 + +1.3
4,382,093 - +0.1
4,382,134 + -0.5
4,382,171 - -0.4
4,382,284 + ECD_04111 0.30 +1.1
4,382,285 - ECD_04111 0.30 -0.9
4,382,285 - ECD_04111 0.30 +0.7
4,382,339 + ECD_04111 0.44 -0.7
4,382,385 + ECD_04111 0.56 -0.5
4,382,480 + ECD_04111 0.80 +0.4
4,382,481 - ECD_04111 0.81 +0.3
4,382,481 - ECD_04111 0.81 +0.6
4,382,481 - ECD_04111 0.81 +1.4
4,382,503 - ECD_04111 0.86 +0.7
4,382,503 - ECD_04111 0.86 -0.1
4,382,568 - -0.5
4,382,598 - -0.3
4,382,617 - +0.1
4,382,648 + -1.4
4,382,671 + -0.6
4,382,671 + +0.4
4,382,671 + -0.2
4,382,747 + ECD_04112 0.26 +0.0
4,382,825 - ECD_04112 0.43 +0.3
4,382,825 - ECD_04112 0.43 -1.0
4,382,840 + ECD_04112 0.46 +2.3
4,382,861 - ECD_04112 0.50 +0.7
4,382,861 - ECD_04112 0.50 +0.5
4,382,877 + ECD_04112 0.54 -0.4
4,382,878 - ECD_04112 0.54 +0.6
4,382,878 - ECD_04112 0.54 -0.9
4,382,946 + ECD_04112 0.69 +0.4
4,383,008 + ECD_04112 0.82 -0.6
4,383,029 + ECD_04112 0.87 +1.1
4,383,040 - ECD_04112 0.89 +0.1
4,383,040 - ECD_04112 0.89 +0.8
4,383,053 + -0.2
4,383,056 + +0.3
4,383,057 - -0.6
4,383,057 - -1.1
4,383,181 + +1.0
4,383,200 + ECD_04113 0.10 -0.0
4,383,358 + ECD_04113 0.27 -0.2
4,383,392 + ECD_04113 0.31 +1.1
4,383,393 - ECD_04113 0.31 +0.6
4,383,393 - ECD_04113 0.31 -0.4
4,383,446 - ECD_04113 0.37 +0.0
4,383,446 - ECD_04113 0.37 -0.1
4,383,481 + ECD_04113 0.40 +0.6
4,383,482 - ECD_04113 0.41 +0.1
4,383,670 - ECD_04113 0.61 +0.8
4,383,730 - ECD_04113 0.67 +0.4
4,383,742 + ECD_04113 0.68 +0.3
4,383,742 + ECD_04113 0.68 +0.0
4,383,743 - ECD_04113 0.68 -0.1
4,383,743 - ECD_04113 0.68 +0.6
4,383,800 + ECD_04113 0.75 -0.3
4,384,010 + -0.1
4,384,010 + -0.1
4,384,011 - -0.0
4,384,022 - +0.4

Or see this region's nucleotide sequence