Experiment: Control_TnD
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04080 and ECD_04081 are separated by 44 nucleotides ECD_04081 and ECD_04082 are separated by 107 nucleotides
ECD_04080: ECD_04080 - D-alanine/D-serine/glycine transporter, at 4,343,228 to 4,344,640
_04080
ECD_04081: ECD_04081 - iron-sulfur cluster repair protein RIC, at 4,344,685 to 4,345,347
_04081
ECD_04082: ECD_04082 - DMT transporter family inner membrane protein, at 4,345,455 to 4,346,420
_04082
Position (kb)
4344
4345
4346 Strain fitness (log2 ratio)
-1
0
1
2 at 4343.923 kb on + strand, within ECD_04080 at 4343.923 kb on + strand, within ECD_04080 at 4343.924 kb on - strand, within ECD_04080 at 4343.992 kb on + strand, within ECD_04080 at 4343.998 kb on + strand, within ECD_04080 at 4343.998 kb on + strand, within ECD_04080 at 4343.998 kb on + strand, within ECD_04080 at 4343.999 kb on - strand, within ECD_04080 at 4343.999 kb on - strand, within ECD_04080 at 4343.999 kb on - strand, within ECD_04080 at 4344.005 kb on + strand, within ECD_04080 at 4344.006 kb on - strand, within ECD_04080 at 4344.006 kb on - strand, within ECD_04080 at 4344.187 kb on + strand, within ECD_04080 at 4344.255 kb on + strand, within ECD_04080 at 4344.256 kb on - strand, within ECD_04080 at 4344.314 kb on + strand, within ECD_04080 at 4344.352 kb on + strand, within ECD_04080 at 4344.353 kb on - strand, within ECD_04080 at 4344.353 kb on - strand, within ECD_04080 at 4344.376 kb on + strand, within ECD_04080 at 4344.456 kb on - strand, within ECD_04080 at 4344.490 kb on - strand, within ECD_04080 at 4344.490 kb on - strand, within ECD_04080 at 4344.493 kb on + strand, within ECD_04080 at 4344.493 kb on + strand, within ECD_04080 at 4344.493 kb on + strand, within ECD_04080 at 4344.493 kb on + strand, within ECD_04080 at 4344.577 kb on + strand at 4344.604 kb on + strand at 4344.605 kb on - strand at 4344.681 kb on + strand at 4344.686 kb on + strand at 4344.715 kb on + strand at 4344.716 kb on - strand at 4344.716 kb on - strand at 4344.716 kb on - strand at 4344.716 kb on - strand at 4344.776 kb on + strand, within ECD_04081 at 4344.776 kb on + strand, within ECD_04081 at 4345.113 kb on + strand, within ECD_04081 at 4345.114 kb on - strand, within ECD_04081 at 4345.114 kb on - strand, within ECD_04081 at 4345.219 kb on - strand, within ECD_04081 at 4345.262 kb on + strand, within ECD_04081 at 4345.274 kb on + strand, within ECD_04081 at 4345.274 kb on + strand, within ECD_04081 at 4345.274 kb on + strand, within ECD_04081 at 4345.274 kb on + strand, within ECD_04081 at 4345.275 kb on - strand, within ECD_04081 at 4345.305 kb on + strand at 4345.325 kb on - strand at 4345.348 kb on - strand at 4345.348 kb on - strand at 4345.418 kb on + strand at 4345.422 kb on + strand at 4345.434 kb on - strand at 4345.434 kb on - strand at 4345.438 kb on - strand at 4345.438 kb on - strand at 4345.479 kb on + strand at 4345.480 kb on - strand at 4345.718 kb on + strand, within ECD_04082 at 4345.719 kb on - strand, within ECD_04082 at 4345.721 kb on + strand, within ECD_04082 at 4345.771 kb on - strand, within ECD_04082 at 4345.783 kb on + strand, within ECD_04082 at 4345.903 kb on + strand, within ECD_04082 at 4345.935 kb on + strand, within ECD_04082 at 4345.952 kb on + strand, within ECD_04082 at 4345.953 kb on - strand, within ECD_04082 at 4345.953 kb on - strand, within ECD_04082 at 4346.083 kb on + strand, within ECD_04082 at 4346.129 kb on + strand, within ECD_04082 at 4346.129 kb on + strand, within ECD_04082 at 4346.130 kb on - strand, within ECD_04082 at 4346.138 kb on + strand, within ECD_04082 at 4346.207 kb on + strand, within ECD_04082 at 4346.208 kb on - strand, within ECD_04082 at 4346.309 kb on - strand, within ECD_04082 at 4346.338 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnD remove 4,343,923 + ECD_04080 0.49 +0.5 4,343,923 + ECD_04080 0.49 -0.3 4,343,924 - ECD_04080 0.49 +0.1 4,343,992 + ECD_04080 0.54 -0.1 4,343,998 + ECD_04080 0.54 -0.7 4,343,998 + ECD_04080 0.54 -1.2 4,343,998 + ECD_04080 0.54 -0.8 4,343,999 - ECD_04080 0.55 -0.4 4,343,999 - ECD_04080 0.55 +0.1 4,343,999 - ECD_04080 0.55 -0.6 4,344,005 + ECD_04080 0.55 -0.0 4,344,006 - ECD_04080 0.55 +0.1 4,344,006 - ECD_04080 0.55 -0.5 4,344,187 + ECD_04080 0.68 +0.2 4,344,255 + ECD_04080 0.73 +0.0 4,344,256 - ECD_04080 0.73 -0.4 4,344,314 + ECD_04080 0.77 -0.6 4,344,352 + ECD_04080 0.80 +0.3 4,344,353 - ECD_04080 0.80 -0.4 4,344,353 - ECD_04080 0.80 -0.3 4,344,376 + ECD_04080 0.81 -0.5 4,344,456 - ECD_04080 0.87 +0.5 4,344,490 - ECD_04080 0.89 +0.7 4,344,490 - ECD_04080 0.89 +0.1 4,344,493 + ECD_04080 0.90 +0.1 4,344,493 + ECD_04080 0.90 -0.7 4,344,493 + ECD_04080 0.90 -0.2 4,344,493 + ECD_04080 0.90 +0.7 4,344,577 + -0.2 4,344,604 + +0.0 4,344,605 - +1.3 4,344,681 + -0.3 4,344,686 + -0.2 4,344,715 + +0.2 4,344,716 - -0.4 4,344,716 - -0.9 4,344,716 - +0.4 4,344,716 - -0.6 4,344,776 + ECD_04081 0.14 +0.8 4,344,776 + ECD_04081 0.14 +0.4 4,345,113 + ECD_04081 0.65 -0.3 4,345,114 - ECD_04081 0.65 -0.3 4,345,114 - ECD_04081 0.65 +0.1 4,345,219 - ECD_04081 0.81 +0.2 4,345,262 + ECD_04081 0.87 +0.4 4,345,274 + ECD_04081 0.89 +0.2 4,345,274 + ECD_04081 0.89 +0.8 4,345,274 + ECD_04081 0.89 +1.5 4,345,274 + ECD_04081 0.89 +0.4 4,345,275 - ECD_04081 0.89 +1.1 4,345,305 + +0.5 4,345,325 - +1.9 4,345,348 - -0.7 4,345,348 - +0.4 4,345,418 + -0.1 4,345,422 + -0.9 4,345,434 - -0.1 4,345,434 - +0.0 4,345,438 - -1.3 4,345,438 - +0.4 4,345,479 + +1.4 4,345,480 - +0.9 4,345,718 + ECD_04082 0.27 -0.0 4,345,719 - ECD_04082 0.27 -1.0 4,345,721 + ECD_04082 0.28 -0.2 4,345,771 - ECD_04082 0.33 -0.3 4,345,783 + ECD_04082 0.34 +1.6 4,345,903 + ECD_04082 0.46 +0.0 4,345,935 + ECD_04082 0.50 -1.4 4,345,952 + ECD_04082 0.51 +0.3 4,345,953 - ECD_04082 0.52 +0.4 4,345,953 - ECD_04082 0.52 -0.2 4,346,083 + ECD_04082 0.65 +0.0 4,346,129 + ECD_04082 0.70 +1.1 4,346,129 + ECD_04082 0.70 +0.5 4,346,130 - ECD_04082 0.70 +0.3 4,346,138 + ECD_04082 0.71 +0.9 4,346,207 + ECD_04082 0.78 +0.4 4,346,208 - ECD_04082 0.78 +0.4 4,346,309 - ECD_04082 0.88 +0.2 4,346,338 + +0.0
Or see this region's nucleotide sequence