Strain Fitness in Escherichia coli BL21 around ECD_04081

Experiment: Control_TnD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04080 and ECD_04081 are separated by 44 nucleotidesECD_04081 and ECD_04082 are separated by 107 nucleotides ECD_04080: ECD_04080 - D-alanine/D-serine/glycine transporter, at 4,343,228 to 4,344,640 _04080 ECD_04081: ECD_04081 - iron-sulfur cluster repair protein RIC, at 4,344,685 to 4,345,347 _04081 ECD_04082: ECD_04082 - DMT transporter family inner membrane protein, at 4,345,455 to 4,346,420 _04082 Position (kb) 4344 4345 4346Strain fitness (log2 ratio) -1 0 1 2at 4343.923 kb on + strand, within ECD_04080at 4343.923 kb on + strand, within ECD_04080at 4343.924 kb on - strand, within ECD_04080at 4343.992 kb on + strand, within ECD_04080at 4343.998 kb on + strand, within ECD_04080at 4343.998 kb on + strand, within ECD_04080at 4343.998 kb on + strand, within ECD_04080at 4343.999 kb on - strand, within ECD_04080at 4343.999 kb on - strand, within ECD_04080at 4343.999 kb on - strand, within ECD_04080at 4344.005 kb on + strand, within ECD_04080at 4344.006 kb on - strand, within ECD_04080at 4344.006 kb on - strand, within ECD_04080at 4344.187 kb on + strand, within ECD_04080at 4344.255 kb on + strand, within ECD_04080at 4344.256 kb on - strand, within ECD_04080at 4344.314 kb on + strand, within ECD_04080at 4344.352 kb on + strand, within ECD_04080at 4344.353 kb on - strand, within ECD_04080at 4344.353 kb on - strand, within ECD_04080at 4344.376 kb on + strand, within ECD_04080at 4344.456 kb on - strand, within ECD_04080at 4344.490 kb on - strand, within ECD_04080at 4344.490 kb on - strand, within ECD_04080at 4344.493 kb on + strand, within ECD_04080at 4344.493 kb on + strand, within ECD_04080at 4344.493 kb on + strand, within ECD_04080at 4344.493 kb on + strand, within ECD_04080at 4344.577 kb on + strandat 4344.604 kb on + strandat 4344.605 kb on - strandat 4344.681 kb on + strandat 4344.686 kb on + strandat 4344.715 kb on + strandat 4344.716 kb on - strandat 4344.716 kb on - strandat 4344.716 kb on - strandat 4344.716 kb on - strandat 4344.776 kb on + strand, within ECD_04081at 4344.776 kb on + strand, within ECD_04081at 4345.113 kb on + strand, within ECD_04081at 4345.114 kb on - strand, within ECD_04081at 4345.114 kb on - strand, within ECD_04081at 4345.219 kb on - strand, within ECD_04081at 4345.262 kb on + strand, within ECD_04081at 4345.274 kb on + strand, within ECD_04081at 4345.274 kb on + strand, within ECD_04081at 4345.274 kb on + strand, within ECD_04081at 4345.274 kb on + strand, within ECD_04081at 4345.275 kb on - strand, within ECD_04081at 4345.305 kb on + strandat 4345.325 kb on - strandat 4345.348 kb on - strandat 4345.348 kb on - strandat 4345.418 kb on + strandat 4345.422 kb on + strandat 4345.434 kb on - strandat 4345.434 kb on - strandat 4345.438 kb on - strandat 4345.438 kb on - strandat 4345.479 kb on + strandat 4345.480 kb on - strandat 4345.718 kb on + strand, within ECD_04082at 4345.719 kb on - strand, within ECD_04082at 4345.721 kb on + strand, within ECD_04082at 4345.771 kb on - strand, within ECD_04082at 4345.783 kb on + strand, within ECD_04082at 4345.903 kb on + strand, within ECD_04082at 4345.935 kb on + strand, within ECD_04082at 4345.952 kb on + strand, within ECD_04082at 4345.953 kb on - strand, within ECD_04082at 4345.953 kb on - strand, within ECD_04082at 4346.083 kb on + strand, within ECD_04082at 4346.129 kb on + strand, within ECD_04082at 4346.129 kb on + strand, within ECD_04082at 4346.130 kb on - strand, within ECD_04082at 4346.138 kb on + strand, within ECD_04082at 4346.207 kb on + strand, within ECD_04082at 4346.208 kb on - strand, within ECD_04082at 4346.309 kb on - strand, within ECD_04082at 4346.338 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnD
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4,343,923 + ECD_04080 0.49 +0.5
4,343,923 + ECD_04080 0.49 -0.3
4,343,924 - ECD_04080 0.49 +0.1
4,343,992 + ECD_04080 0.54 -0.1
4,343,998 + ECD_04080 0.54 -0.7
4,343,998 + ECD_04080 0.54 -1.2
4,343,998 + ECD_04080 0.54 -0.8
4,343,999 - ECD_04080 0.55 -0.4
4,343,999 - ECD_04080 0.55 +0.1
4,343,999 - ECD_04080 0.55 -0.6
4,344,005 + ECD_04080 0.55 -0.0
4,344,006 - ECD_04080 0.55 +0.1
4,344,006 - ECD_04080 0.55 -0.5
4,344,187 + ECD_04080 0.68 +0.2
4,344,255 + ECD_04080 0.73 +0.0
4,344,256 - ECD_04080 0.73 -0.4
4,344,314 + ECD_04080 0.77 -0.6
4,344,352 + ECD_04080 0.80 +0.3
4,344,353 - ECD_04080 0.80 -0.4
4,344,353 - ECD_04080 0.80 -0.3
4,344,376 + ECD_04080 0.81 -0.5
4,344,456 - ECD_04080 0.87 +0.5
4,344,490 - ECD_04080 0.89 +0.7
4,344,490 - ECD_04080 0.89 +0.1
4,344,493 + ECD_04080 0.90 +0.1
4,344,493 + ECD_04080 0.90 -0.7
4,344,493 + ECD_04080 0.90 -0.2
4,344,493 + ECD_04080 0.90 +0.7
4,344,577 + -0.2
4,344,604 + +0.0
4,344,605 - +1.3
4,344,681 + -0.3
4,344,686 + -0.2
4,344,715 + +0.2
4,344,716 - -0.4
4,344,716 - -0.9
4,344,716 - +0.4
4,344,716 - -0.6
4,344,776 + ECD_04081 0.14 +0.8
4,344,776 + ECD_04081 0.14 +0.4
4,345,113 + ECD_04081 0.65 -0.3
4,345,114 - ECD_04081 0.65 -0.3
4,345,114 - ECD_04081 0.65 +0.1
4,345,219 - ECD_04081 0.81 +0.2
4,345,262 + ECD_04081 0.87 +0.4
4,345,274 + ECD_04081 0.89 +0.2
4,345,274 + ECD_04081 0.89 +0.8
4,345,274 + ECD_04081 0.89 +1.5
4,345,274 + ECD_04081 0.89 +0.4
4,345,275 - ECD_04081 0.89 +1.1
4,345,305 + +0.5
4,345,325 - +1.9
4,345,348 - -0.7
4,345,348 - +0.4
4,345,418 + -0.1
4,345,422 + -0.9
4,345,434 - -0.1
4,345,434 - +0.0
4,345,438 - -1.3
4,345,438 - +0.4
4,345,479 + +1.4
4,345,480 - +0.9
4,345,718 + ECD_04082 0.27 -0.0
4,345,719 - ECD_04082 0.27 -1.0
4,345,721 + ECD_04082 0.28 -0.2
4,345,771 - ECD_04082 0.33 -0.3
4,345,783 + ECD_04082 0.34 +1.6
4,345,903 + ECD_04082 0.46 +0.0
4,345,935 + ECD_04082 0.50 -1.4
4,345,952 + ECD_04082 0.51 +0.3
4,345,953 - ECD_04082 0.52 +0.4
4,345,953 - ECD_04082 0.52 -0.2
4,346,083 + ECD_04082 0.65 +0.0
4,346,129 + ECD_04082 0.70 +1.1
4,346,129 + ECD_04082 0.70 +0.5
4,346,130 - ECD_04082 0.70 +0.3
4,346,138 + ECD_04082 0.71 +0.9
4,346,207 + ECD_04082 0.78 +0.4
4,346,208 - ECD_04082 0.78 +0.4
4,346,309 - ECD_04082 0.88 +0.2
4,346,338 + +0.0

Or see this region's nucleotide sequence