Strain Fitness in Escherichia coli BL21 around ECD_03882

Experiment: Control_TnD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03881 and ECD_03882 overlap by 4 nucleotidesECD_03882 and ECD_03883 are separated by 11 nucleotides ECD_03881: ECD_03881 - fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein, at 4,111,345 to 4,112,670 _03881 ECD_03882: ECD_03882 - phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase, at 4,112,667 to 4,113,956 _03882 ECD_03883: ECD_03883 - IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase, at 4,113,968 to 4,115,557 _03883 Position (kb) 4112 4113 4114Strain fitness (log2 ratio) -1 0 1 2at 4111.682 kb on + strand, within ECD_03881at 4111.713 kb on + strand, within ECD_03881at 4111.713 kb on + strand, within ECD_03881at 4111.714 kb on - strand, within ECD_03881at 4111.714 kb on - strand, within ECD_03881at 4111.722 kb on + strand, within ECD_03881at 4111.722 kb on + strand, within ECD_03881at 4111.723 kb on - strand, within ECD_03881at 4112.077 kb on - strand, within ECD_03881at 4112.154 kb on + strand, within ECD_03881at 4112.299 kb on - strand, within ECD_03881at 4112.344 kb on - strand, within ECD_03881at 4112.368 kb on - strand, within ECD_03881at 4112.415 kb on + strand, within ECD_03881at 4112.470 kb on + strand, within ECD_03881at 4112.471 kb on - strand, within ECD_03881at 4112.472 kb on + strand, within ECD_03881at 4112.472 kb on + strand, within ECD_03881at 4112.473 kb on - strand, within ECD_03881at 4112.805 kb on + strand, within ECD_03882at 4112.827 kb on - strand, within ECD_03882at 4112.827 kb on - strand, within ECD_03882at 4113.160 kb on + strand, within ECD_03882at 4113.161 kb on - strand, within ECD_03882at 4113.161 kb on - strand, within ECD_03882at 4113.206 kb on + strand, within ECD_03882at 4113.206 kb on + strand, within ECD_03882at 4113.207 kb on - strand, within ECD_03882at 4113.207 kb on - strand, within ECD_03882at 4113.207 kb on - strand, within ECD_03882at 4113.446 kb on + strand, within ECD_03882at 4113.446 kb on + strand, within ECD_03882at 4113.447 kb on - strand, within ECD_03882at 4113.556 kb on + strand, within ECD_03882at 4113.556 kb on + strand, within ECD_03882at 4113.557 kb on - strand, within ECD_03882at 4113.573 kb on + strand, within ECD_03882at 4113.573 kb on + strand, within ECD_03882at 4113.611 kb on + strand, within ECD_03882at 4113.612 kb on - strand, within ECD_03882at 4113.711 kb on - strand, within ECD_03882at 4113.946 kb on - strandat 4113.948 kb on + strandat 4113.948 kb on + strandat 4113.948 kb on + strandat 4113.949 kb on - strandat 4113.949 kb on - strandat 4113.958 kb on + strandat 4113.958 kb on + strandat 4113.958 kb on + strandat 4113.959 kb on - strandat 4113.959 kb on - strandat 4114.071 kb on - strandat 4114.243 kb on + strand, within ECD_03883at 4114.258 kb on - strand, within ECD_03883at 4114.472 kb on + strand, within ECD_03883at 4114.473 kb on - strand, within ECD_03883at 4114.636 kb on - strand, within ECD_03883at 4114.647 kb on + strand, within ECD_03883at 4114.771 kb on + strand, within ECD_03883at 4114.771 kb on + strand, within ECD_03883at 4114.772 kb on - strand, within ECD_03883at 4114.773 kb on + strand, within ECD_03883at 4114.773 kb on + strand, within ECD_03883at 4114.774 kb on - strand, within ECD_03883at 4114.774 kb on - strand, within ECD_03883at 4114.774 kb on - strand, within ECD_03883at 4114.774 kb on - strand, within ECD_03883at 4114.838 kb on + strand, within ECD_03883at 4114.838 kb on + strand, within ECD_03883at 4114.839 kb on - strand, within ECD_03883at 4114.839 kb on - strand, within ECD_03883at 4114.839 kb on - strand, within ECD_03883at 4114.839 kb on - strand, within ECD_03883at 4114.840 kb on + strand, within ECD_03883at 4114.842 kb on + strand, within ECD_03883at 4114.842 kb on + strand, within ECD_03883at 4114.842 kb on + strand, within ECD_03883at 4114.843 kb on - strand, within ECD_03883at 4114.843 kb on - strand, within ECD_03883at 4114.843 kb on - strand, within ECD_03883at 4114.843 kb on - strand, within ECD_03883

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnD
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4,111,682 + ECD_03881 0.25 -1.3
4,111,713 + ECD_03881 0.28 +0.5
4,111,713 + ECD_03881 0.28 -0.8
4,111,714 - ECD_03881 0.28 +0.4
4,111,714 - ECD_03881 0.28 +0.2
4,111,722 + ECD_03881 0.28 +0.3
4,111,722 + ECD_03881 0.28 -0.4
4,111,723 - ECD_03881 0.29 +0.8
4,112,077 - ECD_03881 0.55 +0.7
4,112,154 + ECD_03881 0.61 -0.4
4,112,299 - ECD_03881 0.72 -1.0
4,112,344 - ECD_03881 0.75 -0.0
4,112,368 - ECD_03881 0.77 -0.2
4,112,415 + ECD_03881 0.81 -0.2
4,112,470 + ECD_03881 0.85 -0.1
4,112,471 - ECD_03881 0.85 +0.2
4,112,472 + ECD_03881 0.85 +0.3
4,112,472 + ECD_03881 0.85 +0.0
4,112,473 - ECD_03881 0.85 +0.2
4,112,805 + ECD_03882 0.11 -1.6
4,112,827 - ECD_03882 0.12 -0.6
4,112,827 - ECD_03882 0.12 +0.0
4,113,160 + ECD_03882 0.38 -0.2
4,113,161 - ECD_03882 0.38 -0.0
4,113,161 - ECD_03882 0.38 -0.3
4,113,206 + ECD_03882 0.42 +0.9
4,113,206 + ECD_03882 0.42 +1.4
4,113,207 - ECD_03882 0.42 +2.3
4,113,207 - ECD_03882 0.42 +1.0
4,113,207 - ECD_03882 0.42 -0.2
4,113,446 + ECD_03882 0.60 +0.8
4,113,446 + ECD_03882 0.60 +0.4
4,113,447 - ECD_03882 0.60 -0.2
4,113,556 + ECD_03882 0.69 +0.2
4,113,556 + ECD_03882 0.69 +0.4
4,113,557 - ECD_03882 0.69 -0.6
4,113,573 + ECD_03882 0.70 +0.4
4,113,573 + ECD_03882 0.70 +0.5
4,113,611 + ECD_03882 0.73 -1.3
4,113,612 - ECD_03882 0.73 -0.4
4,113,711 - ECD_03882 0.81 -0.4
4,113,946 - -0.0
4,113,948 + -0.4
4,113,948 + -0.2
4,113,948 + +0.5
4,113,949 - -0.7
4,113,949 - -0.7
4,113,958 + +0.3
4,113,958 + +0.8
4,113,958 + +0.7
4,113,959 - -0.3
4,113,959 - +0.8
4,114,071 - +0.0
4,114,243 + ECD_03883 0.17 -0.9
4,114,258 - ECD_03883 0.18 -1.3
4,114,472 + ECD_03883 0.32 -0.2
4,114,473 - ECD_03883 0.32 +0.2
4,114,636 - ECD_03883 0.42 -1.6
4,114,647 + ECD_03883 0.43 +1.2
4,114,771 + ECD_03883 0.51 -0.5
4,114,771 + ECD_03883 0.51 +0.9
4,114,772 - ECD_03883 0.51 -0.4
4,114,773 + ECD_03883 0.51 -0.6
4,114,773 + ECD_03883 0.51 -0.0
4,114,774 - ECD_03883 0.51 -0.3
4,114,774 - ECD_03883 0.51 +0.1
4,114,774 - ECD_03883 0.51 +0.5
4,114,774 - ECD_03883 0.51 +0.2
4,114,838 + ECD_03883 0.55 +0.0
4,114,838 + ECD_03883 0.55 +0.1
4,114,839 - ECD_03883 0.55 +0.2
4,114,839 - ECD_03883 0.55 -0.4
4,114,839 - ECD_03883 0.55 +0.0
4,114,839 - ECD_03883 0.55 -0.1
4,114,840 + ECD_03883 0.55 +0.6
4,114,842 + ECD_03883 0.55 +0.7
4,114,842 + ECD_03883 0.55 -1.1
4,114,842 + ECD_03883 0.55 +0.6
4,114,843 - ECD_03883 0.55 -0.2
4,114,843 - ECD_03883 0.55 -0.4
4,114,843 - ECD_03883 0.55 -0.4
4,114,843 - ECD_03883 0.55 +0.6

Or see this region's nucleotide sequence