Experiment: Control_TnD
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03511 and ECD_03512 are separated by 279 nucleotides ECD_03512 and ECD_03513 are separated by 120 nucleotides
ECD_03511: ECD_03511 - glutamate transporter, at 3,694,937 to 3,696,142
_03511
ECD_03512: ECD_03512 - xanthine permease, at 3,696,422 to 3,697,813
_03512
ECD_03513: ECD_03513 - putative inner membrane-anchored periplasmic AsmA family protein, at 3,697,934 to 3,699,643
_03513
Position (kb)
3696
3697
3698 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3695.468 kb on - strand, within ECD_03511 at 3695.566 kb on + strand, within ECD_03511 at 3695.599 kb on - strand, within ECD_03511 at 3695.708 kb on - strand, within ECD_03511 at 3695.749 kb on + strand, within ECD_03511 at 3695.750 kb on - strand, within ECD_03511 at 3695.750 kb on - strand, within ECD_03511 at 3695.794 kb on + strand, within ECD_03511 at 3695.795 kb on - strand, within ECD_03511 at 3695.800 kb on + strand, within ECD_03511 at 3695.953 kb on + strand, within ECD_03511 at 3695.954 kb on - strand, within ECD_03511 at 3695.954 kb on - strand, within ECD_03511 at 3695.954 kb on - strand, within ECD_03511 at 3695.991 kb on - strand, within ECD_03511 at 3695.993 kb on + strand, within ECD_03511 at 3695.993 kb on + strand, within ECD_03511 at 3695.993 kb on + strand, within ECD_03511 at 3695.993 kb on + strand, within ECD_03511 at 3695.994 kb on - strand, within ECD_03511 at 3695.994 kb on - strand, within ECD_03511 at 3695.996 kb on + strand, within ECD_03511 at 3696.045 kb on + strand at 3696.045 kb on + strand at 3696.045 kb on + strand at 3696.045 kb on + strand at 3696.046 kb on - strand at 3696.046 kb on - strand at 3696.079 kb on + strand at 3696.079 kb on + strand at 3696.123 kb on - strand at 3696.123 kb on - strand at 3696.142 kb on + strand at 3696.142 kb on + strand at 3696.142 kb on + strand at 3696.143 kb on - strand at 3696.143 kb on - strand at 3696.143 kb on - strand at 3696.146 kb on + strand at 3696.146 kb on + strand at 3696.146 kb on + strand at 3696.147 kb on - strand at 3696.147 kb on - strand at 3696.147 kb on - strand at 3696.147 kb on - strand at 3696.147 kb on - strand at 3696.147 kb on - strand at 3696.147 kb on - strand at 3696.147 kb on - strand at 3696.147 kb on - strand at 3696.156 kb on + strand at 3696.157 kb on - strand at 3696.175 kb on + strand at 3696.184 kb on + strand at 3696.185 kb on - strand at 3696.185 kb on - strand at 3696.185 kb on - strand at 3696.215 kb on + strand at 3696.215 kb on + strand at 3696.216 kb on - strand at 3696.216 kb on - strand at 3696.216 kb on - strand at 3696.233 kb on - strand at 3696.233 kb on - strand at 3696.286 kb on - strand at 3696.325 kb on + strand at 3696.491 kb on + strand at 3696.492 kb on - strand at 3696.589 kb on - strand, within ECD_03512 at 3696.589 kb on - strand, within ECD_03512 at 3696.634 kb on + strand, within ECD_03512 at 3696.635 kb on - strand, within ECD_03512 at 3696.635 kb on - strand, within ECD_03512 at 3696.635 kb on - strand, within ECD_03512 at 3696.637 kb on + strand, within ECD_03512 at 3696.637 kb on + strand, within ECD_03512 at 3696.637 kb on + strand, within ECD_03512 at 3696.637 kb on + strand, within ECD_03512 at 3696.637 kb on + strand, within ECD_03512 at 3696.638 kb on - strand, within ECD_03512 at 3696.638 kb on - strand, within ECD_03512 at 3696.638 kb on - strand, within ECD_03512 at 3696.638 kb on - strand, within ECD_03512 at 3696.638 kb on - strand, within ECD_03512 at 3696.638 kb on - strand, within ECD_03512 at 3696.640 kb on + strand, within ECD_03512 at 3696.640 kb on + strand, within ECD_03512 at 3696.640 kb on + strand, within ECD_03512 at 3696.640 kb on + strand, within ECD_03512 at 3696.640 kb on + strand, within ECD_03512 at 3696.640 kb on + strand, within ECD_03512 at 3696.641 kb on - strand, within ECD_03512 at 3696.641 kb on - strand, within ECD_03512 at 3696.641 kb on - strand, within ECD_03512 at 3696.683 kb on - strand, within ECD_03512 at 3696.718 kb on + strand, within ECD_03512 at 3696.719 kb on - strand, within ECD_03512 at 3696.799 kb on + strand, within ECD_03512 at 3696.799 kb on + strand, within ECD_03512 at 3697.038 kb on + strand, within ECD_03512 at 3697.044 kb on + strand, within ECD_03512 at 3697.044 kb on + strand, within ECD_03512 at 3697.044 kb on + strand, within ECD_03512 at 3697.044 kb on + strand, within ECD_03512 at 3697.044 kb on + strand, within ECD_03512 at 3697.044 kb on + strand, within ECD_03512 at 3697.044 kb on + strand, within ECD_03512 at 3697.045 kb on - strand, within ECD_03512 at 3697.069 kb on + strand, within ECD_03512 at 3697.070 kb on - strand, within ECD_03512 at 3697.077 kb on - strand, within ECD_03512 at 3697.081 kb on - strand, within ECD_03512 at 3697.136 kb on - strand, within ECD_03512 at 3697.184 kb on - strand, within ECD_03512 at 3697.184 kb on - strand, within ECD_03512 at 3697.184 kb on - strand, within ECD_03512 at 3697.202 kb on + strand, within ECD_03512 at 3697.203 kb on - strand, within ECD_03512 at 3697.203 kb on - strand, within ECD_03512 at 3697.334 kb on + strand, within ECD_03512 at 3697.335 kb on - strand, within ECD_03512 at 3697.578 kb on + strand, within ECD_03512 at 3697.578 kb on + strand, within ECD_03512 at 3697.578 kb on + strand, within ECD_03512 at 3697.578 kb on + strand, within ECD_03512 at 3697.578 kb on + strand, within ECD_03512 at 3697.579 kb on - strand, within ECD_03512 at 3697.579 kb on - strand, within ECD_03512 at 3697.765 kb on + strand at 3697.768 kb on + strand at 3697.769 kb on - strand at 3697.812 kb on - strand at 3697.833 kb on + strand at 3697.833 kb on + strand at 3697.834 kb on - strand at 3697.898 kb on + strand at 3697.898 kb on + strand at 3697.898 kb on + strand at 3697.899 kb on - strand at 3697.899 kb on - strand at 3697.907 kb on + strand at 3697.908 kb on - strand at 3697.961 kb on + strand at 3697.961 kb on + strand at 3697.962 kb on - strand at 3697.980 kb on + strand at 3698.000 kb on + strand at 3698.001 kb on - strand at 3698.001 kb on - strand at 3698.001 kb on - strand at 3698.035 kb on + strand at 3698.036 kb on - strand at 3698.036 kb on - strand at 3698.059 kb on + strand at 3698.116 kb on + strand, within ECD_03513 at 3698.116 kb on + strand, within ECD_03513 at 3698.117 kb on - strand, within ECD_03513 at 3698.318 kb on - strand, within ECD_03513 at 3698.326 kb on + strand, within ECD_03513 at 3698.330 kb on - strand, within ECD_03513 at 3698.338 kb on + strand, within ECD_03513 at 3698.380 kb on - strand, within ECD_03513 at 3698.405 kb on - strand, within ECD_03513 at 3698.437 kb on + strand, within ECD_03513 at 3698.481 kb on + strand, within ECD_03513 at 3698.481 kb on + strand, within ECD_03513 at 3698.481 kb on + strand, within ECD_03513 at 3698.481 kb on + strand, within ECD_03513 at 3698.482 kb on - strand, within ECD_03513 at 3698.497 kb on + strand, within ECD_03513 at 3698.497 kb on + strand, within ECD_03513 at 3698.620 kb on + strand, within ECD_03513 at 3698.622 kb on + strand, within ECD_03513 at 3698.622 kb on + strand, within ECD_03513 at 3698.622 kb on + strand, within ECD_03513 at 3698.622 kb on + strand, within ECD_03513 at 3698.622 kb on + strand, within ECD_03513 at 3698.622 kb on + strand, within ECD_03513 at 3698.622 kb on + strand, within ECD_03513 at 3698.622 kb on + strand, within ECD_03513 at 3698.622 kb on + strand, within ECD_03513 at 3698.623 kb on - strand, within ECD_03513 at 3698.623 kb on - strand, within ECD_03513 at 3698.623 kb on - strand, within ECD_03513 at 3698.623 kb on - strand, within ECD_03513 at 3698.623 kb on - strand, within ECD_03513 at 3698.623 kb on - strand, within ECD_03513 at 3698.623 kb on - strand, within ECD_03513 at 3698.628 kb on + strand, within ECD_03513 at 3698.629 kb on - strand, within ECD_03513 at 3698.629 kb on - strand, within ECD_03513 at 3698.667 kb on + strand, within ECD_03513 at 3698.667 kb on + strand, within ECD_03513 at 3698.667 kb on + strand, within ECD_03513 at 3698.668 kb on - strand, within ECD_03513
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnD remove 3,695,468 - ECD_03511 0.44 -0.3 3,695,566 + ECD_03511 0.52 -0.2 3,695,599 - ECD_03511 0.55 +0.8 3,695,708 - ECD_03511 0.64 +0.3 3,695,749 + ECD_03511 0.67 +0.1 3,695,750 - ECD_03511 0.67 -1.3 3,695,750 - ECD_03511 0.67 +0.3 3,695,794 + ECD_03511 0.71 -0.1 3,695,795 - ECD_03511 0.71 -0.5 3,695,800 + ECD_03511 0.72 -0.0 3,695,953 + ECD_03511 0.84 -0.4 3,695,954 - ECD_03511 0.84 -0.2 3,695,954 - ECD_03511 0.84 -2.0 3,695,954 - ECD_03511 0.84 +0.6 3,695,991 - ECD_03511 0.87 -0.5 3,695,993 + ECD_03511 0.88 +0.1 3,695,993 + ECD_03511 0.88 -0.5 3,695,993 + ECD_03511 0.88 -0.6 3,695,993 + ECD_03511 0.88 -0.7 3,695,994 - ECD_03511 0.88 -0.1 3,695,994 - ECD_03511 0.88 -1.0 3,695,996 + ECD_03511 0.88 +0.4 3,696,045 + -0.4 3,696,045 + +1.1 3,696,045 + -0.1 3,696,045 + +0.4 3,696,046 - +0.4 3,696,046 - -0.3 3,696,079 + -0.6 3,696,079 + +0.6 3,696,123 - +0.5 3,696,123 - +0.2 3,696,142 + +1.4 3,696,142 + -0.3 3,696,142 + +0.7 3,696,143 - +0.1 3,696,143 - -0.0 3,696,143 - -1.1 3,696,146 + -1.2 3,696,146 + +0.2 3,696,146 + +0.7 3,696,147 - -1.5 3,696,147 - -0.5 3,696,147 - -0.2 3,696,147 - +1.4 3,696,147 - -0.5 3,696,147 - -0.2 3,696,147 - +0.2 3,696,147 - -0.5 3,696,147 - -1.3 3,696,156 + +1.1 3,696,157 - +0.2 3,696,175 + +0.1 3,696,184 + -0.4 3,696,185 - +0.6 3,696,185 - +0.7 3,696,185 - -0.1 3,696,215 + -0.1 3,696,215 + +0.2 3,696,216 - +0.6 3,696,216 - +0.7 3,696,216 - -0.4 3,696,233 - +0.8 3,696,233 - -0.1 3,696,286 - +0.3 3,696,325 + +0.3 3,696,491 + +0.2 3,696,492 - +0.7 3,696,589 - ECD_03512 0.12 +0.7 3,696,589 - ECD_03512 0.12 +0.4 3,696,634 + ECD_03512 0.15 +1.8 3,696,635 - ECD_03512 0.15 -0.7 3,696,635 - ECD_03512 0.15 +0.2 3,696,635 - ECD_03512 0.15 -0.6 3,696,637 + ECD_03512 0.15 +0.3 3,696,637 + ECD_03512 0.15 -0.3 3,696,637 + ECD_03512 0.15 +0.4 3,696,637 + ECD_03512 0.15 -1.4 3,696,637 + ECD_03512 0.15 -0.5 3,696,638 - ECD_03512 0.16 -0.5 3,696,638 - ECD_03512 0.16 +0.8 3,696,638 - ECD_03512 0.16 +0.2 3,696,638 - ECD_03512 0.16 +0.6 3,696,638 - ECD_03512 0.16 +0.6 3,696,638 - ECD_03512 0.16 +0.1 3,696,640 + ECD_03512 0.16 +0.3 3,696,640 + ECD_03512 0.16 +0.5 3,696,640 + ECD_03512 0.16 +0.1 3,696,640 + ECD_03512 0.16 +1.8 3,696,640 + ECD_03512 0.16 +0.1 3,696,640 + ECD_03512 0.16 +0.4 3,696,641 - ECD_03512 0.16 -0.1 3,696,641 - ECD_03512 0.16 -0.2 3,696,641 - ECD_03512 0.16 -1.0 3,696,683 - ECD_03512 0.19 +1.2 3,696,718 + ECD_03512 0.21 +0.7 3,696,719 - ECD_03512 0.21 -0.5 3,696,799 + ECD_03512 0.27 -0.2 3,696,799 + ECD_03512 0.27 +1.0 3,697,038 + ECD_03512 0.44 -0.2 3,697,044 + ECD_03512 0.45 +1.2 3,697,044 + ECD_03512 0.45 +0.6 3,697,044 + ECD_03512 0.45 +0.1 3,697,044 + ECD_03512 0.45 +0.6 3,697,044 + ECD_03512 0.45 -0.1 3,697,044 + ECD_03512 0.45 +0.4 3,697,044 + ECD_03512 0.45 -1.2 3,697,045 - ECD_03512 0.45 -0.2 3,697,069 + ECD_03512 0.46 -0.6 3,697,070 - ECD_03512 0.47 +1.1 3,697,077 - ECD_03512 0.47 +0.3 3,697,081 - ECD_03512 0.47 -0.8 3,697,136 - ECD_03512 0.51 +1.4 3,697,184 - ECD_03512 0.55 +0.7 3,697,184 - ECD_03512 0.55 -0.2 3,697,184 - ECD_03512 0.55 +0.9 3,697,202 + ECD_03512 0.56 +1.8 3,697,203 - ECD_03512 0.56 -0.7 3,697,203 - ECD_03512 0.56 +0.1 3,697,334 + ECD_03512 0.66 -1.2 3,697,335 - ECD_03512 0.66 -0.0 3,697,578 + ECD_03512 0.83 -0.1 3,697,578 + ECD_03512 0.83 +0.1 3,697,578 + ECD_03512 0.83 +0.6 3,697,578 + ECD_03512 0.83 +0.0 3,697,578 + ECD_03512 0.83 -0.1 3,697,579 - ECD_03512 0.83 +1.1 3,697,579 - ECD_03512 0.83 -0.1 3,697,765 + +0.3 3,697,768 + -0.1 3,697,769 - -0.0 3,697,812 - +0.0 3,697,833 + -0.6 3,697,833 + -0.3 3,697,834 - -0.0 3,697,898 + -0.3 3,697,898 + +0.5 3,697,898 + -0.3 3,697,899 - +0.3 3,697,899 - +0.1 3,697,907 + +0.3 3,697,908 - +0.0 3,697,961 + -0.9 3,697,961 + +0.9 3,697,962 - +0.6 3,697,980 + +0.4 3,698,000 + -0.8 3,698,001 - +0.0 3,698,001 - +0.7 3,698,001 - +0.2 3,698,035 + +0.0 3,698,036 - +0.8 3,698,036 - +0.9 3,698,059 + -1.5 3,698,116 + ECD_03513 0.11 -0.3 3,698,116 + ECD_03513 0.11 +0.1 3,698,117 - ECD_03513 0.11 +0.2 3,698,318 - ECD_03513 0.22 -0.6 3,698,326 + ECD_03513 0.23 -0.3 3,698,330 - ECD_03513 0.23 -0.6 3,698,338 + ECD_03513 0.24 +0.8 3,698,380 - ECD_03513 0.26 +0.0 3,698,405 - ECD_03513 0.28 +0.4 3,698,437 + ECD_03513 0.29 -0.8 3,698,481 + ECD_03513 0.32 -0.0 3,698,481 + ECD_03513 0.32 -0.2 3,698,481 + ECD_03513 0.32 -0.2 3,698,481 + ECD_03513 0.32 +0.2 3,698,482 - ECD_03513 0.32 +0.7 3,698,497 + ECD_03513 0.33 +0.9 3,698,497 + ECD_03513 0.33 -0.0 3,698,620 + ECD_03513 0.40 -0.8 3,698,622 + ECD_03513 0.40 +0.0 3,698,622 + ECD_03513 0.40 +0.8 3,698,622 + ECD_03513 0.40 -0.9 3,698,622 + ECD_03513 0.40 +0.5 3,698,622 + ECD_03513 0.40 +0.6 3,698,622 + ECD_03513 0.40 -0.7 3,698,622 + ECD_03513 0.40 +0.5 3,698,622 + ECD_03513 0.40 -0.4 3,698,622 + ECD_03513 0.40 +0.3 3,698,623 - ECD_03513 0.40 +0.4 3,698,623 - ECD_03513 0.40 +1.2 3,698,623 - ECD_03513 0.40 +0.9 3,698,623 - ECD_03513 0.40 +0.0 3,698,623 - ECD_03513 0.40 +0.2 3,698,623 - ECD_03513 0.40 +0.2 3,698,623 - ECD_03513 0.40 -0.2 3,698,628 + ECD_03513 0.41 -0.2 3,698,629 - ECD_03513 0.41 +0.6 3,698,629 - ECD_03513 0.41 -1.0 3,698,667 + ECD_03513 0.43 -0.2 3,698,667 + ECD_03513 0.43 -0.2 3,698,667 + ECD_03513 0.43 -1.8 3,698,668 - ECD_03513 0.43 +0.1
Or see this region's nucleotide sequence