Strain Fitness in Escherichia coli BL21 around ECD_03512

Experiment: Control_TnD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03511 and ECD_03512 are separated by 279 nucleotidesECD_03512 and ECD_03513 are separated by 120 nucleotides ECD_03511: ECD_03511 - glutamate transporter, at 3,694,937 to 3,696,142 _03511 ECD_03512: ECD_03512 - xanthine permease, at 3,696,422 to 3,697,813 _03512 ECD_03513: ECD_03513 - putative inner membrane-anchored periplasmic AsmA family protein, at 3,697,934 to 3,699,643 _03513 Position (kb) 3696 3697 3698Strain fitness (log2 ratio) -2 -1 0 1 2at 3695.468 kb on - strand, within ECD_03511at 3695.566 kb on + strand, within ECD_03511at 3695.599 kb on - strand, within ECD_03511at 3695.708 kb on - strand, within ECD_03511at 3695.749 kb on + strand, within ECD_03511at 3695.750 kb on - strand, within ECD_03511at 3695.750 kb on - strand, within ECD_03511at 3695.794 kb on + strand, within ECD_03511at 3695.795 kb on - strand, within ECD_03511at 3695.800 kb on + strand, within ECD_03511at 3695.953 kb on + strand, within ECD_03511at 3695.954 kb on - strand, within ECD_03511at 3695.954 kb on - strand, within ECD_03511at 3695.954 kb on - strand, within ECD_03511at 3695.991 kb on - strand, within ECD_03511at 3695.993 kb on + strand, within ECD_03511at 3695.993 kb on + strand, within ECD_03511at 3695.993 kb on + strand, within ECD_03511at 3695.993 kb on + strand, within ECD_03511at 3695.994 kb on - strand, within ECD_03511at 3695.994 kb on - strand, within ECD_03511at 3695.996 kb on + strand, within ECD_03511at 3696.045 kb on + strandat 3696.045 kb on + strandat 3696.045 kb on + strandat 3696.045 kb on + strandat 3696.046 kb on - strandat 3696.046 kb on - strandat 3696.079 kb on + strandat 3696.079 kb on + strandat 3696.123 kb on - strandat 3696.123 kb on - strandat 3696.142 kb on + strandat 3696.142 kb on + strandat 3696.142 kb on + strandat 3696.143 kb on - strandat 3696.143 kb on - strandat 3696.143 kb on - strandat 3696.146 kb on + strandat 3696.146 kb on + strandat 3696.146 kb on + strandat 3696.147 kb on - strandat 3696.147 kb on - strandat 3696.147 kb on - strandat 3696.147 kb on - strandat 3696.147 kb on - strandat 3696.147 kb on - strandat 3696.147 kb on - strandat 3696.147 kb on - strandat 3696.147 kb on - strandat 3696.156 kb on + strandat 3696.157 kb on - strandat 3696.175 kb on + strandat 3696.184 kb on + strandat 3696.185 kb on - strandat 3696.185 kb on - strandat 3696.185 kb on - strandat 3696.215 kb on + strandat 3696.215 kb on + strandat 3696.216 kb on - strandat 3696.216 kb on - strandat 3696.216 kb on - strandat 3696.233 kb on - strandat 3696.233 kb on - strandat 3696.286 kb on - strandat 3696.325 kb on + strandat 3696.491 kb on + strandat 3696.492 kb on - strandat 3696.589 kb on - strand, within ECD_03512at 3696.589 kb on - strand, within ECD_03512at 3696.634 kb on + strand, within ECD_03512at 3696.635 kb on - strand, within ECD_03512at 3696.635 kb on - strand, within ECD_03512at 3696.635 kb on - strand, within ECD_03512at 3696.637 kb on + strand, within ECD_03512at 3696.637 kb on + strand, within ECD_03512at 3696.637 kb on + strand, within ECD_03512at 3696.637 kb on + strand, within ECD_03512at 3696.637 kb on + strand, within ECD_03512at 3696.638 kb on - strand, within ECD_03512at 3696.638 kb on - strand, within ECD_03512at 3696.638 kb on - strand, within ECD_03512at 3696.638 kb on - strand, within ECD_03512at 3696.638 kb on - strand, within ECD_03512at 3696.638 kb on - strand, within ECD_03512at 3696.640 kb on + strand, within ECD_03512at 3696.640 kb on + strand, within ECD_03512at 3696.640 kb on + strand, within ECD_03512at 3696.640 kb on + strand, within ECD_03512at 3696.640 kb on + strand, within ECD_03512at 3696.640 kb on + strand, within ECD_03512at 3696.641 kb on - strand, within ECD_03512at 3696.641 kb on - strand, within ECD_03512at 3696.641 kb on - strand, within ECD_03512at 3696.683 kb on - strand, within ECD_03512at 3696.718 kb on + strand, within ECD_03512at 3696.719 kb on - strand, within ECD_03512at 3696.799 kb on + strand, within ECD_03512at 3696.799 kb on + strand, within ECD_03512at 3697.038 kb on + strand, within ECD_03512at 3697.044 kb on + strand, within ECD_03512at 3697.044 kb on + strand, within ECD_03512at 3697.044 kb on + strand, within ECD_03512at 3697.044 kb on + strand, within ECD_03512at 3697.044 kb on + strand, within ECD_03512at 3697.044 kb on + strand, within ECD_03512at 3697.044 kb on + strand, within ECD_03512at 3697.045 kb on - strand, within ECD_03512at 3697.069 kb on + strand, within ECD_03512at 3697.070 kb on - strand, within ECD_03512at 3697.077 kb on - strand, within ECD_03512at 3697.081 kb on - strand, within ECD_03512at 3697.136 kb on - strand, within ECD_03512at 3697.184 kb on - strand, within ECD_03512at 3697.184 kb on - strand, within ECD_03512at 3697.184 kb on - strand, within ECD_03512at 3697.202 kb on + strand, within ECD_03512at 3697.203 kb on - strand, within ECD_03512at 3697.203 kb on - strand, within ECD_03512at 3697.334 kb on + strand, within ECD_03512at 3697.335 kb on - strand, within ECD_03512at 3697.578 kb on + strand, within ECD_03512at 3697.578 kb on + strand, within ECD_03512at 3697.578 kb on + strand, within ECD_03512at 3697.578 kb on + strand, within ECD_03512at 3697.578 kb on + strand, within ECD_03512at 3697.579 kb on - strand, within ECD_03512at 3697.579 kb on - strand, within ECD_03512at 3697.765 kb on + strandat 3697.768 kb on + strandat 3697.769 kb on - strandat 3697.812 kb on - strandat 3697.833 kb on + strandat 3697.833 kb on + strandat 3697.834 kb on - strandat 3697.898 kb on + strandat 3697.898 kb on + strandat 3697.898 kb on + strandat 3697.899 kb on - strandat 3697.899 kb on - strandat 3697.907 kb on + strandat 3697.908 kb on - strandat 3697.961 kb on + strandat 3697.961 kb on + strandat 3697.962 kb on - strandat 3697.980 kb on + strandat 3698.000 kb on + strandat 3698.001 kb on - strandat 3698.001 kb on - strandat 3698.001 kb on - strandat 3698.035 kb on + strandat 3698.036 kb on - strandat 3698.036 kb on - strandat 3698.059 kb on + strandat 3698.116 kb on + strand, within ECD_03513at 3698.116 kb on + strand, within ECD_03513at 3698.117 kb on - strand, within ECD_03513at 3698.318 kb on - strand, within ECD_03513at 3698.326 kb on + strand, within ECD_03513at 3698.330 kb on - strand, within ECD_03513at 3698.338 kb on + strand, within ECD_03513at 3698.380 kb on - strand, within ECD_03513at 3698.405 kb on - strand, within ECD_03513at 3698.437 kb on + strand, within ECD_03513at 3698.481 kb on + strand, within ECD_03513at 3698.481 kb on + strand, within ECD_03513at 3698.481 kb on + strand, within ECD_03513at 3698.481 kb on + strand, within ECD_03513at 3698.482 kb on - strand, within ECD_03513at 3698.497 kb on + strand, within ECD_03513at 3698.497 kb on + strand, within ECD_03513at 3698.620 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.622 kb on + strand, within ECD_03513at 3698.623 kb on - strand, within ECD_03513at 3698.623 kb on - strand, within ECD_03513at 3698.623 kb on - strand, within ECD_03513at 3698.623 kb on - strand, within ECD_03513at 3698.623 kb on - strand, within ECD_03513at 3698.623 kb on - strand, within ECD_03513at 3698.623 kb on - strand, within ECD_03513at 3698.628 kb on + strand, within ECD_03513at 3698.629 kb on - strand, within ECD_03513at 3698.629 kb on - strand, within ECD_03513at 3698.667 kb on + strand, within ECD_03513at 3698.667 kb on + strand, within ECD_03513at 3698.667 kb on + strand, within ECD_03513at 3698.668 kb on - strand, within ECD_03513

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnD
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3,695,468 - ECD_03511 0.44 -0.3
3,695,566 + ECD_03511 0.52 -0.2
3,695,599 - ECD_03511 0.55 +0.8
3,695,708 - ECD_03511 0.64 +0.3
3,695,749 + ECD_03511 0.67 +0.1
3,695,750 - ECD_03511 0.67 -1.3
3,695,750 - ECD_03511 0.67 +0.3
3,695,794 + ECD_03511 0.71 -0.1
3,695,795 - ECD_03511 0.71 -0.5
3,695,800 + ECD_03511 0.72 -0.0
3,695,953 + ECD_03511 0.84 -0.4
3,695,954 - ECD_03511 0.84 -0.2
3,695,954 - ECD_03511 0.84 -2.0
3,695,954 - ECD_03511 0.84 +0.6
3,695,991 - ECD_03511 0.87 -0.5
3,695,993 + ECD_03511 0.88 +0.1
3,695,993 + ECD_03511 0.88 -0.5
3,695,993 + ECD_03511 0.88 -0.6
3,695,993 + ECD_03511 0.88 -0.7
3,695,994 - ECD_03511 0.88 -0.1
3,695,994 - ECD_03511 0.88 -1.0
3,695,996 + ECD_03511 0.88 +0.4
3,696,045 + -0.4
3,696,045 + +1.1
3,696,045 + -0.1
3,696,045 + +0.4
3,696,046 - +0.4
3,696,046 - -0.3
3,696,079 + -0.6
3,696,079 + +0.6
3,696,123 - +0.5
3,696,123 - +0.2
3,696,142 + +1.4
3,696,142 + -0.3
3,696,142 + +0.7
3,696,143 - +0.1
3,696,143 - -0.0
3,696,143 - -1.1
3,696,146 + -1.2
3,696,146 + +0.2
3,696,146 + +0.7
3,696,147 - -1.5
3,696,147 - -0.5
3,696,147 - -0.2
3,696,147 - +1.4
3,696,147 - -0.5
3,696,147 - -0.2
3,696,147 - +0.2
3,696,147 - -0.5
3,696,147 - -1.3
3,696,156 + +1.1
3,696,157 - +0.2
3,696,175 + +0.1
3,696,184 + -0.4
3,696,185 - +0.6
3,696,185 - +0.7
3,696,185 - -0.1
3,696,215 + -0.1
3,696,215 + +0.2
3,696,216 - +0.6
3,696,216 - +0.7
3,696,216 - -0.4
3,696,233 - +0.8
3,696,233 - -0.1
3,696,286 - +0.3
3,696,325 + +0.3
3,696,491 + +0.2
3,696,492 - +0.7
3,696,589 - ECD_03512 0.12 +0.7
3,696,589 - ECD_03512 0.12 +0.4
3,696,634 + ECD_03512 0.15 +1.8
3,696,635 - ECD_03512 0.15 -0.7
3,696,635 - ECD_03512 0.15 +0.2
3,696,635 - ECD_03512 0.15 -0.6
3,696,637 + ECD_03512 0.15 +0.3
3,696,637 + ECD_03512 0.15 -0.3
3,696,637 + ECD_03512 0.15 +0.4
3,696,637 + ECD_03512 0.15 -1.4
3,696,637 + ECD_03512 0.15 -0.5
3,696,638 - ECD_03512 0.16 -0.5
3,696,638 - ECD_03512 0.16 +0.8
3,696,638 - ECD_03512 0.16 +0.2
3,696,638 - ECD_03512 0.16 +0.6
3,696,638 - ECD_03512 0.16 +0.6
3,696,638 - ECD_03512 0.16 +0.1
3,696,640 + ECD_03512 0.16 +0.3
3,696,640 + ECD_03512 0.16 +0.5
3,696,640 + ECD_03512 0.16 +0.1
3,696,640 + ECD_03512 0.16 +1.8
3,696,640 + ECD_03512 0.16 +0.1
3,696,640 + ECD_03512 0.16 +0.4
3,696,641 - ECD_03512 0.16 -0.1
3,696,641 - ECD_03512 0.16 -0.2
3,696,641 - ECD_03512 0.16 -1.0
3,696,683 - ECD_03512 0.19 +1.2
3,696,718 + ECD_03512 0.21 +0.7
3,696,719 - ECD_03512 0.21 -0.5
3,696,799 + ECD_03512 0.27 -0.2
3,696,799 + ECD_03512 0.27 +1.0
3,697,038 + ECD_03512 0.44 -0.2
3,697,044 + ECD_03512 0.45 +1.2
3,697,044 + ECD_03512 0.45 +0.6
3,697,044 + ECD_03512 0.45 +0.1
3,697,044 + ECD_03512 0.45 +0.6
3,697,044 + ECD_03512 0.45 -0.1
3,697,044 + ECD_03512 0.45 +0.4
3,697,044 + ECD_03512 0.45 -1.2
3,697,045 - ECD_03512 0.45 -0.2
3,697,069 + ECD_03512 0.46 -0.6
3,697,070 - ECD_03512 0.47 +1.1
3,697,077 - ECD_03512 0.47 +0.3
3,697,081 - ECD_03512 0.47 -0.8
3,697,136 - ECD_03512 0.51 +1.4
3,697,184 - ECD_03512 0.55 +0.7
3,697,184 - ECD_03512 0.55 -0.2
3,697,184 - ECD_03512 0.55 +0.9
3,697,202 + ECD_03512 0.56 +1.8
3,697,203 - ECD_03512 0.56 -0.7
3,697,203 - ECD_03512 0.56 +0.1
3,697,334 + ECD_03512 0.66 -1.2
3,697,335 - ECD_03512 0.66 -0.0
3,697,578 + ECD_03512 0.83 -0.1
3,697,578 + ECD_03512 0.83 +0.1
3,697,578 + ECD_03512 0.83 +0.6
3,697,578 + ECD_03512 0.83 +0.0
3,697,578 + ECD_03512 0.83 -0.1
3,697,579 - ECD_03512 0.83 +1.1
3,697,579 - ECD_03512 0.83 -0.1
3,697,765 + +0.3
3,697,768 + -0.1
3,697,769 - -0.0
3,697,812 - +0.0
3,697,833 + -0.6
3,697,833 + -0.3
3,697,834 - -0.0
3,697,898 + -0.3
3,697,898 + +0.5
3,697,898 + -0.3
3,697,899 - +0.3
3,697,899 - +0.1
3,697,907 + +0.3
3,697,908 - +0.0
3,697,961 + -0.9
3,697,961 + +0.9
3,697,962 - +0.6
3,697,980 + +0.4
3,698,000 + -0.8
3,698,001 - +0.0
3,698,001 - +0.7
3,698,001 - +0.2
3,698,035 + +0.0
3,698,036 - +0.8
3,698,036 - +0.9
3,698,059 + -1.5
3,698,116 + ECD_03513 0.11 -0.3
3,698,116 + ECD_03513 0.11 +0.1
3,698,117 - ECD_03513 0.11 +0.2
3,698,318 - ECD_03513 0.22 -0.6
3,698,326 + ECD_03513 0.23 -0.3
3,698,330 - ECD_03513 0.23 -0.6
3,698,338 + ECD_03513 0.24 +0.8
3,698,380 - ECD_03513 0.26 +0.0
3,698,405 - ECD_03513 0.28 +0.4
3,698,437 + ECD_03513 0.29 -0.8
3,698,481 + ECD_03513 0.32 -0.0
3,698,481 + ECD_03513 0.32 -0.2
3,698,481 + ECD_03513 0.32 -0.2
3,698,481 + ECD_03513 0.32 +0.2
3,698,482 - ECD_03513 0.32 +0.7
3,698,497 + ECD_03513 0.33 +0.9
3,698,497 + ECD_03513 0.33 -0.0
3,698,620 + ECD_03513 0.40 -0.8
3,698,622 + ECD_03513 0.40 +0.0
3,698,622 + ECD_03513 0.40 +0.8
3,698,622 + ECD_03513 0.40 -0.9
3,698,622 + ECD_03513 0.40 +0.5
3,698,622 + ECD_03513 0.40 +0.6
3,698,622 + ECD_03513 0.40 -0.7
3,698,622 + ECD_03513 0.40 +0.5
3,698,622 + ECD_03513 0.40 -0.4
3,698,622 + ECD_03513 0.40 +0.3
3,698,623 - ECD_03513 0.40 +0.4
3,698,623 - ECD_03513 0.40 +1.2
3,698,623 - ECD_03513 0.40 +0.9
3,698,623 - ECD_03513 0.40 +0.0
3,698,623 - ECD_03513 0.40 +0.2
3,698,623 - ECD_03513 0.40 +0.2
3,698,623 - ECD_03513 0.40 -0.2
3,698,628 + ECD_03513 0.41 -0.2
3,698,629 - ECD_03513 0.41 +0.6
3,698,629 - ECD_03513 0.41 -1.0
3,698,667 + ECD_03513 0.43 -0.2
3,698,667 + ECD_03513 0.43 -0.2
3,698,667 + ECD_03513 0.43 -1.8
3,698,668 - ECD_03513 0.43 +0.1

Or see this region's nucleotide sequence