Experiment: Control_TnD
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02996 and ECD_02997 are separated by 248 nucleotides ECD_02997 and ECD_02998 are separated by 22 nucleotides ECD_02998 and ECD_02999 are separated by 10 nucleotides
ECD_02996: ECD_02996 - transcriptional repressor of the aga regulon, at 3,144,049 to 3,144,858
_02996
ECD_02997: ECD_02997 - tagatose 6-phosphate aldolase 1, kbaZ subunit, at 3,145,107 to 3,146,387
_02997
ECD_02998: ECD_02998 - N-acetylgalactosamine-specific enzyme IIB component of PTS, at 3,146,410 to 3,146,883
_02998
ECD_02999: ECD_02999 - N-acetylgalactosamine-specific enzyme IIC component of PTS, at 3,146,894 to 3,147,673
_02999
Position (kb)
3145
3146
3147 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3144.163 kb on - strand, within ECD_02996 at 3144.163 kb on - strand, within ECD_02996 at 3144.187 kb on - strand, within ECD_02996 at 3144.203 kb on - strand, within ECD_02996 at 3144.299 kb on - strand, within ECD_02996 at 3144.299 kb on - strand, within ECD_02996 at 3144.299 kb on - strand, within ECD_02996 at 3144.299 kb on - strand, within ECD_02996 at 3144.643 kb on - strand, within ECD_02996 at 3144.666 kb on - strand, within ECD_02996 at 3144.727 kb on - strand, within ECD_02996 at 3144.727 kb on - strand, within ECD_02996 at 3144.731 kb on - strand, within ECD_02996 at 3144.738 kb on - strand, within ECD_02996 at 3144.738 kb on - strand, within ECD_02996 at 3144.738 kb on - strand, within ECD_02996 at 3144.859 kb on - strand at 3144.957 kb on - strand at 3145.164 kb on + strand at 3145.165 kb on - strand at 3145.264 kb on + strand, within ECD_02997 at 3145.264 kb on + strand, within ECD_02997 at 3145.264 kb on + strand, within ECD_02997 at 3145.265 kb on - strand, within ECD_02997 at 3145.265 kb on - strand, within ECD_02997 at 3145.614 kb on + strand, within ECD_02997 at 3145.847 kb on - strand, within ECD_02997 at 3146.095 kb on - strand, within ECD_02997 at 3146.150 kb on + strand, within ECD_02997 at 3146.150 kb on + strand, within ECD_02997 at 3146.150 kb on + strand, within ECD_02997 at 3146.150 kb on + strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.172 kb on + strand, within ECD_02997 at 3146.218 kb on + strand, within ECD_02997 at 3146.222 kb on + strand, within ECD_02997 at 3146.222 kb on + strand, within ECD_02997 at 3146.280 kb on + strand at 3146.281 kb on - strand at 3146.418 kb on + strand at 3146.419 kb on - strand at 3146.582 kb on + strand, within ECD_02998 at 3146.583 kb on - strand, within ECD_02998 at 3146.728 kb on - strand, within ECD_02998 at 3146.734 kb on + strand, within ECD_02998 at 3146.876 kb on + strand at 3146.977 kb on + strand, within ECD_02999 at 3146.977 kb on + strand, within ECD_02999 at 3146.977 kb on + strand, within ECD_02999 at 3146.977 kb on + strand, within ECD_02999 at 3146.978 kb on - strand, within ECD_02999 at 3146.978 kb on - strand, within ECD_02999 at 3146.978 kb on - strand, within ECD_02999 at 3146.978 kb on - strand, within ECD_02999 at 3146.978 kb on - strand, within ECD_02999 at 3147.127 kb on + strand, within ECD_02999 at 3147.211 kb on - strand, within ECD_02999 at 3147.223 kb on + strand, within ECD_02999 at 3147.223 kb on + strand, within ECD_02999 at 3147.224 kb on - strand, within ECD_02999 at 3147.224 kb on - strand, within ECD_02999 at 3147.315 kb on - strand, within ECD_02999 at 3147.368 kb on - strand, within ECD_02999 at 3147.371 kb on + strand, within ECD_02999 at 3147.372 kb on - strand, within ECD_02999 at 3147.372 kb on - strand, within ECD_02999 at 3147.372 kb on - strand, within ECD_02999 at 3147.372 kb on - strand, within ECD_02999 at 3147.372 kb on - strand, within ECD_02999
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnD remove 3,144,163 - ECD_02996 0.14 +0.6 3,144,163 - ECD_02996 0.14 -0.6 3,144,187 - ECD_02996 0.17 -0.9 3,144,203 - ECD_02996 0.19 -1.2 3,144,299 - ECD_02996 0.31 -0.2 3,144,299 - ECD_02996 0.31 +0.3 3,144,299 - ECD_02996 0.31 -0.4 3,144,299 - ECD_02996 0.31 -0.7 3,144,643 - ECD_02996 0.73 -0.7 3,144,666 - ECD_02996 0.76 +0.3 3,144,727 - ECD_02996 0.84 +0.6 3,144,727 - ECD_02996 0.84 -0.5 3,144,731 - ECD_02996 0.84 +0.0 3,144,738 - ECD_02996 0.85 -0.2 3,144,738 - ECD_02996 0.85 +0.7 3,144,738 - ECD_02996 0.85 -0.7 3,144,859 - -0.7 3,144,957 - +0.1 3,145,164 + -1.9 3,145,165 - -0.3 3,145,264 + ECD_02997 0.12 -0.7 3,145,264 + ECD_02997 0.12 -1.0 3,145,264 + ECD_02997 0.12 +0.5 3,145,265 - ECD_02997 0.12 -0.4 3,145,265 - ECD_02997 0.12 +0.2 3,145,614 + ECD_02997 0.40 +0.5 3,145,847 - ECD_02997 0.58 +1.7 3,146,095 - ECD_02997 0.77 -0.1 3,146,150 + ECD_02997 0.81 +0.5 3,146,150 + ECD_02997 0.81 -0.0 3,146,150 + ECD_02997 0.81 +0.7 3,146,150 + ECD_02997 0.81 -0.9 3,146,151 - ECD_02997 0.81 +1.3 3,146,151 - ECD_02997 0.81 +0.3 3,146,151 - ECD_02997 0.81 +0.9 3,146,151 - ECD_02997 0.81 +0.6 3,146,151 - ECD_02997 0.81 -1.7 3,146,151 - ECD_02997 0.81 -0.3 3,146,151 - ECD_02997 0.81 -2.8 3,146,151 - ECD_02997 0.81 +0.4 3,146,151 - ECD_02997 0.81 +0.9 3,146,172 + ECD_02997 0.83 +0.8 3,146,218 + ECD_02997 0.87 +1.0 3,146,222 + ECD_02997 0.87 -0.2 3,146,222 + ECD_02997 0.87 +0.3 3,146,280 + +0.7 3,146,281 - +0.4 3,146,418 + +0.5 3,146,419 - +0.7 3,146,582 + ECD_02998 0.36 +0.3 3,146,583 - ECD_02998 0.36 +0.6 3,146,728 - ECD_02998 0.67 +0.8 3,146,734 + ECD_02998 0.68 -2.5 3,146,876 + -0.6 3,146,977 + ECD_02999 0.11 +2.2 3,146,977 + ECD_02999 0.11 -0.5 3,146,977 + ECD_02999 0.11 +0.4 3,146,977 + ECD_02999 0.11 +0.3 3,146,978 - ECD_02999 0.11 -0.2 3,146,978 - ECD_02999 0.11 +0.1 3,146,978 - ECD_02999 0.11 +1.9 3,146,978 - ECD_02999 0.11 +0.3 3,146,978 - ECD_02999 0.11 +0.1 3,147,127 + ECD_02999 0.30 -0.5 3,147,211 - ECD_02999 0.41 +0.3 3,147,223 + ECD_02999 0.42 -0.1 3,147,223 + ECD_02999 0.42 +0.3 3,147,224 - ECD_02999 0.42 +0.3 3,147,224 - ECD_02999 0.42 -2.3 3,147,315 - ECD_02999 0.54 -1.1 3,147,368 - ECD_02999 0.61 +1.3 3,147,371 + ECD_02999 0.61 -0.7 3,147,372 - ECD_02999 0.61 -0.3 3,147,372 - ECD_02999 0.61 -0.4 3,147,372 - ECD_02999 0.61 +0.3 3,147,372 - ECD_02999 0.61 +0.9 3,147,372 - ECD_02999 0.61 +0.3
Or see this region's nucleotide sequence