Strain Fitness in Escherichia coli BL21 around ECD_02997

Experiment: Control_TnD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02996 and ECD_02997 are separated by 248 nucleotidesECD_02997 and ECD_02998 are separated by 22 nucleotidesECD_02998 and ECD_02999 are separated by 10 nucleotides ECD_02996: ECD_02996 - transcriptional repressor of the aga regulon, at 3,144,049 to 3,144,858 _02996 ECD_02997: ECD_02997 - tagatose 6-phosphate aldolase 1, kbaZ subunit, at 3,145,107 to 3,146,387 _02997 ECD_02998: ECD_02998 - N-acetylgalactosamine-specific enzyme IIB component of PTS, at 3,146,410 to 3,146,883 _02998 ECD_02999: ECD_02999 - N-acetylgalactosamine-specific enzyme IIC component of PTS, at 3,146,894 to 3,147,673 _02999 Position (kb) 3145 3146 3147Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3144.163 kb on - strand, within ECD_02996at 3144.163 kb on - strand, within ECD_02996at 3144.187 kb on - strand, within ECD_02996at 3144.203 kb on - strand, within ECD_02996at 3144.299 kb on - strand, within ECD_02996at 3144.299 kb on - strand, within ECD_02996at 3144.299 kb on - strand, within ECD_02996at 3144.299 kb on - strand, within ECD_02996at 3144.643 kb on - strand, within ECD_02996at 3144.666 kb on - strand, within ECD_02996at 3144.727 kb on - strand, within ECD_02996at 3144.727 kb on - strand, within ECD_02996at 3144.731 kb on - strand, within ECD_02996at 3144.738 kb on - strand, within ECD_02996at 3144.738 kb on - strand, within ECD_02996at 3144.738 kb on - strand, within ECD_02996at 3144.859 kb on - strandat 3144.957 kb on - strandat 3145.164 kb on + strandat 3145.165 kb on - strandat 3145.264 kb on + strand, within ECD_02997at 3145.264 kb on + strand, within ECD_02997at 3145.264 kb on + strand, within ECD_02997at 3145.265 kb on - strand, within ECD_02997at 3145.265 kb on - strand, within ECD_02997at 3145.614 kb on + strand, within ECD_02997at 3145.847 kb on - strand, within ECD_02997at 3146.095 kb on - strand, within ECD_02997at 3146.150 kb on + strand, within ECD_02997at 3146.150 kb on + strand, within ECD_02997at 3146.150 kb on + strand, within ECD_02997at 3146.150 kb on + strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.172 kb on + strand, within ECD_02997at 3146.218 kb on + strand, within ECD_02997at 3146.222 kb on + strand, within ECD_02997at 3146.222 kb on + strand, within ECD_02997at 3146.280 kb on + strandat 3146.281 kb on - strandat 3146.418 kb on + strandat 3146.419 kb on - strandat 3146.582 kb on + strand, within ECD_02998at 3146.583 kb on - strand, within ECD_02998at 3146.728 kb on - strand, within ECD_02998at 3146.734 kb on + strand, within ECD_02998at 3146.876 kb on + strandat 3146.977 kb on + strand, within ECD_02999at 3146.977 kb on + strand, within ECD_02999at 3146.977 kb on + strand, within ECD_02999at 3146.977 kb on + strand, within ECD_02999at 3146.978 kb on - strand, within ECD_02999at 3146.978 kb on - strand, within ECD_02999at 3146.978 kb on - strand, within ECD_02999at 3146.978 kb on - strand, within ECD_02999at 3146.978 kb on - strand, within ECD_02999at 3147.127 kb on + strand, within ECD_02999at 3147.211 kb on - strand, within ECD_02999at 3147.223 kb on + strand, within ECD_02999at 3147.223 kb on + strand, within ECD_02999at 3147.224 kb on - strand, within ECD_02999at 3147.224 kb on - strand, within ECD_02999at 3147.315 kb on - strand, within ECD_02999at 3147.368 kb on - strand, within ECD_02999at 3147.371 kb on + strand, within ECD_02999at 3147.372 kb on - strand, within ECD_02999at 3147.372 kb on - strand, within ECD_02999at 3147.372 kb on - strand, within ECD_02999at 3147.372 kb on - strand, within ECD_02999at 3147.372 kb on - strand, within ECD_02999

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnD
remove
3,144,163 - ECD_02996 0.14 +0.6
3,144,163 - ECD_02996 0.14 -0.6
3,144,187 - ECD_02996 0.17 -0.9
3,144,203 - ECD_02996 0.19 -1.2
3,144,299 - ECD_02996 0.31 -0.2
3,144,299 - ECD_02996 0.31 +0.3
3,144,299 - ECD_02996 0.31 -0.4
3,144,299 - ECD_02996 0.31 -0.7
3,144,643 - ECD_02996 0.73 -0.7
3,144,666 - ECD_02996 0.76 +0.3
3,144,727 - ECD_02996 0.84 +0.6
3,144,727 - ECD_02996 0.84 -0.5
3,144,731 - ECD_02996 0.84 +0.0
3,144,738 - ECD_02996 0.85 -0.2
3,144,738 - ECD_02996 0.85 +0.7
3,144,738 - ECD_02996 0.85 -0.7
3,144,859 - -0.7
3,144,957 - +0.1
3,145,164 + -1.9
3,145,165 - -0.3
3,145,264 + ECD_02997 0.12 -0.7
3,145,264 + ECD_02997 0.12 -1.0
3,145,264 + ECD_02997 0.12 +0.5
3,145,265 - ECD_02997 0.12 -0.4
3,145,265 - ECD_02997 0.12 +0.2
3,145,614 + ECD_02997 0.40 +0.5
3,145,847 - ECD_02997 0.58 +1.7
3,146,095 - ECD_02997 0.77 -0.1
3,146,150 + ECD_02997 0.81 +0.5
3,146,150 + ECD_02997 0.81 -0.0
3,146,150 + ECD_02997 0.81 +0.7
3,146,150 + ECD_02997 0.81 -0.9
3,146,151 - ECD_02997 0.81 +1.3
3,146,151 - ECD_02997 0.81 +0.3
3,146,151 - ECD_02997 0.81 +0.9
3,146,151 - ECD_02997 0.81 +0.6
3,146,151 - ECD_02997 0.81 -1.7
3,146,151 - ECD_02997 0.81 -0.3
3,146,151 - ECD_02997 0.81 -2.8
3,146,151 - ECD_02997 0.81 +0.4
3,146,151 - ECD_02997 0.81 +0.9
3,146,172 + ECD_02997 0.83 +0.8
3,146,218 + ECD_02997 0.87 +1.0
3,146,222 + ECD_02997 0.87 -0.2
3,146,222 + ECD_02997 0.87 +0.3
3,146,280 + +0.7
3,146,281 - +0.4
3,146,418 + +0.5
3,146,419 - +0.7
3,146,582 + ECD_02998 0.36 +0.3
3,146,583 - ECD_02998 0.36 +0.6
3,146,728 - ECD_02998 0.67 +0.8
3,146,734 + ECD_02998 0.68 -2.5
3,146,876 + -0.6
3,146,977 + ECD_02999 0.11 +2.2
3,146,977 + ECD_02999 0.11 -0.5
3,146,977 + ECD_02999 0.11 +0.4
3,146,977 + ECD_02999 0.11 +0.3
3,146,978 - ECD_02999 0.11 -0.2
3,146,978 - ECD_02999 0.11 +0.1
3,146,978 - ECD_02999 0.11 +1.9
3,146,978 - ECD_02999 0.11 +0.3
3,146,978 - ECD_02999 0.11 +0.1
3,147,127 + ECD_02999 0.30 -0.5
3,147,211 - ECD_02999 0.41 +0.3
3,147,223 + ECD_02999 0.42 -0.1
3,147,223 + ECD_02999 0.42 +0.3
3,147,224 - ECD_02999 0.42 +0.3
3,147,224 - ECD_02999 0.42 -2.3
3,147,315 - ECD_02999 0.54 -1.1
3,147,368 - ECD_02999 0.61 +1.3
3,147,371 + ECD_02999 0.61 -0.7
3,147,372 - ECD_02999 0.61 -0.3
3,147,372 - ECD_02999 0.61 -0.4
3,147,372 - ECD_02999 0.61 +0.3
3,147,372 - ECD_02999 0.61 +0.9
3,147,372 - ECD_02999 0.61 +0.3

Or see this region's nucleotide sequence