Experiment: Control_TnD
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02883 and ECD_02884 are separated by 136 nucleotides ECD_02884 and ECD_02885 are separated by 104 nucleotides
ECD_02883: ECD_02883 - transcriptional activator of yqhD, at 3,021,699 to 3,022,655
_02883
ECD_02884: ECD_02884 - aldehyde reductase, NADPH-dependent, at 3,022,792 to 3,023,955
_02884
ECD_02885: ECD_02885 - 2,5-diketo-D-gluconate reductase A, at 3,024,060 to 3,024,887
_02885
Position (kb)
3022
3023
3024 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3021.860 kb on + strand, within ECD_02883 at 3021.871 kb on + strand, within ECD_02883 at 3021.872 kb on - strand, within ECD_02883 at 3021.884 kb on - strand, within ECD_02883 at 3021.914 kb on + strand, within ECD_02883 at 3021.915 kb on - strand, within ECD_02883 at 3021.989 kb on - strand, within ECD_02883 at 3021.989 kb on - strand, within ECD_02883 at 3021.992 kb on + strand, within ECD_02883 at 3021.993 kb on - strand, within ECD_02883 at 3022.090 kb on + strand, within ECD_02883 at 3022.090 kb on + strand, within ECD_02883 at 3022.090 kb on + strand, within ECD_02883 at 3022.091 kb on - strand, within ECD_02883 at 3022.091 kb on - strand, within ECD_02883 at 3022.091 kb on - strand, within ECD_02883 at 3022.093 kb on + strand, within ECD_02883 at 3022.128 kb on - strand, within ECD_02883 at 3022.179 kb on + strand, within ECD_02883 at 3022.276 kb on - strand, within ECD_02883 at 3022.287 kb on - strand, within ECD_02883 at 3022.376 kb on - strand, within ECD_02883 at 3022.376 kb on - strand, within ECD_02883 at 3022.376 kb on - strand, within ECD_02883 at 3022.376 kb on - strand, within ECD_02883 at 3022.376 kb on - strand, within ECD_02883 at 3022.390 kb on + strand, within ECD_02883 at 3022.444 kb on - strand, within ECD_02883 at 3022.766 kb on + strand at 3022.766 kb on + strand at 3022.767 kb on - strand at 3022.887 kb on - strand at 3022.887 kb on - strand at 3022.897 kb on + strand at 3022.898 kb on - strand at 3022.983 kb on + strand, within ECD_02884 at 3023.119 kb on + strand, within ECD_02884 at 3023.173 kb on - strand, within ECD_02884 at 3023.254 kb on - strand, within ECD_02884 at 3023.326 kb on + strand, within ECD_02884 at 3023.326 kb on + strand, within ECD_02884 at 3023.327 kb on - strand, within ECD_02884 at 3023.328 kb on + strand, within ECD_02884 at 3023.328 kb on + strand, within ECD_02884 at 3023.329 kb on - strand, within ECD_02884 at 3023.332 kb on + strand, within ECD_02884 at 3023.332 kb on + strand, within ECD_02884 at 3023.333 kb on - strand, within ECD_02884 at 3023.333 kb on - strand, within ECD_02884 at 3023.381 kb on + strand, within ECD_02884 at 3023.382 kb on - strand, within ECD_02884 at 3023.398 kb on + strand, within ECD_02884 at 3023.398 kb on + strand, within ECD_02884 at 3023.398 kb on + strand, within ECD_02884 at 3023.398 kb on + strand, within ECD_02884 at 3023.399 kb on - strand, within ECD_02884 at 3023.404 kb on - strand, within ECD_02884 at 3023.404 kb on - strand, within ECD_02884 at 3023.462 kb on + strand, within ECD_02884 at 3023.503 kb on + strand, within ECD_02884 at 3023.504 kb on - strand, within ECD_02884 at 3023.592 kb on + strand, within ECD_02884 at 3023.592 kb on + strand, within ECD_02884 at 3023.698 kb on - strand, within ECD_02884 at 3023.710 kb on + strand, within ECD_02884 at 3023.711 kb on - strand, within ECD_02884 at 3023.757 kb on + strand, within ECD_02884 at 3023.913 kb on + strand at 3023.913 kb on + strand at 3023.913 kb on + strand at 3023.913 kb on + strand at 3023.913 kb on + strand at 3023.913 kb on + strand at 3023.913 kb on + strand at 3023.913 kb on + strand at 3023.914 kb on - strand at 3023.934 kb on + strand at 3023.934 kb on + strand at 3023.934 kb on + strand at 3023.935 kb on - strand at 3023.935 kb on - strand at 3023.935 kb on - strand at 3023.935 kb on - strand at 3023.935 kb on - strand at 3023.935 kb on - strand at 3023.936 kb on + strand at 3023.936 kb on + strand at 3023.936 kb on + strand at 3023.938 kb on + strand at 3023.938 kb on + strand at 3023.939 kb on - strand at 3023.939 kb on - strand at 3024.002 kb on + strand at 3024.002 kb on + strand at 3024.002 kb on + strand at 3024.002 kb on + strand at 3024.003 kb on - strand at 3024.003 kb on - strand at 3024.003 kb on - strand at 3024.044 kb on + strand at 3024.044 kb on + strand at 3024.044 kb on + strand at 3024.045 kb on - strand at 3024.046 kb on + strand at 3024.046 kb on + strand at 3024.046 kb on + strand at 3024.046 kb on + strand at 3024.059 kb on + strand at 3024.059 kb on + strand at 3024.060 kb on - strand at 3024.060 kb on - strand at 3024.060 kb on - strand at 3024.080 kb on + strand at 3024.080 kb on + strand at 3024.086 kb on - strand at 3024.138 kb on - strand at 3024.211 kb on - strand, within ECD_02885 at 3024.357 kb on + strand, within ECD_02885 at 3024.357 kb on + strand, within ECD_02885 at 3024.357 kb on + strand, within ECD_02885 at 3024.373 kb on + strand, within ECD_02885 at 3024.373 kb on + strand, within ECD_02885 at 3024.373 kb on + strand, within ECD_02885 at 3024.373 kb on + strand, within ECD_02885 at 3024.406 kb on - strand, within ECD_02885 at 3024.452 kb on - strand, within ECD_02885 at 3024.532 kb on + strand, within ECD_02885 at 3024.575 kb on - strand, within ECD_02885 at 3024.681 kb on - strand, within ECD_02885 at 3024.681 kb on - strand, within ECD_02885 at 3024.685 kb on - strand, within ECD_02885 at 3024.770 kb on + strand, within ECD_02885 at 3024.912 kb on - strand at 3024.946 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnD remove 3,021,860 + ECD_02883 0.17 +0.9 3,021,871 + ECD_02883 0.18 +0.5 3,021,872 - ECD_02883 0.18 +0.9 3,021,884 - ECD_02883 0.19 -1.0 3,021,914 + ECD_02883 0.22 -0.9 3,021,915 - ECD_02883 0.23 +0.8 3,021,989 - ECD_02883 0.30 -1.3 3,021,989 - ECD_02883 0.30 -0.1 3,021,992 + ECD_02883 0.31 -1.0 3,021,993 - ECD_02883 0.31 +0.7 3,022,090 + ECD_02883 0.41 +0.2 3,022,090 + ECD_02883 0.41 -0.9 3,022,090 + ECD_02883 0.41 -1.1 3,022,091 - ECD_02883 0.41 -0.6 3,022,091 - ECD_02883 0.41 -0.9 3,022,091 - ECD_02883 0.41 -0.0 3,022,093 + ECD_02883 0.41 +0.0 3,022,128 - ECD_02883 0.45 -0.1 3,022,179 + ECD_02883 0.50 +0.5 3,022,276 - ECD_02883 0.60 -0.7 3,022,287 - ECD_02883 0.61 -0.3 3,022,376 - ECD_02883 0.71 +0.2 3,022,376 - ECD_02883 0.71 -0.3 3,022,376 - ECD_02883 0.71 -0.5 3,022,376 - ECD_02883 0.71 -0.5 3,022,376 - ECD_02883 0.71 +0.5 3,022,390 + ECD_02883 0.72 -0.3 3,022,444 - ECD_02883 0.78 +1.0 3,022,766 + -0.0 3,022,766 + -0.1 3,022,767 - -0.4 3,022,887 - -0.5 3,022,887 - +0.6 3,022,897 + +0.7 3,022,898 - +0.0 3,022,983 + ECD_02884 0.16 -0.2 3,023,119 + ECD_02884 0.28 +0.3 3,023,173 - ECD_02884 0.33 -0.8 3,023,254 - ECD_02884 0.40 -0.7 3,023,326 + ECD_02884 0.46 -0.1 3,023,326 + ECD_02884 0.46 +0.2 3,023,327 - ECD_02884 0.46 -1.8 3,023,328 + ECD_02884 0.46 +0.3 3,023,328 + ECD_02884 0.46 -0.3 3,023,329 - ECD_02884 0.46 +0.5 3,023,332 + ECD_02884 0.46 -1.0 3,023,332 + ECD_02884 0.46 +0.3 3,023,333 - ECD_02884 0.46 +0.1 3,023,333 - ECD_02884 0.46 +0.7 3,023,381 + ECD_02884 0.51 -0.3 3,023,382 - ECD_02884 0.51 -0.0 3,023,398 + ECD_02884 0.52 +1.6 3,023,398 + ECD_02884 0.52 +0.4 3,023,398 + ECD_02884 0.52 -2.4 3,023,398 + ECD_02884 0.52 -0.0 3,023,399 - ECD_02884 0.52 -0.4 3,023,404 - ECD_02884 0.53 -0.6 3,023,404 - ECD_02884 0.53 -1.4 3,023,462 + ECD_02884 0.58 -0.8 3,023,503 + ECD_02884 0.61 -0.8 3,023,504 - ECD_02884 0.61 +0.5 3,023,592 + ECD_02884 0.69 -0.9 3,023,592 + ECD_02884 0.69 +0.2 3,023,698 - ECD_02884 0.78 +0.6 3,023,710 + ECD_02884 0.79 -2.1 3,023,711 - ECD_02884 0.79 -0.1 3,023,757 + ECD_02884 0.83 -0.3 3,023,913 + -0.4 3,023,913 + -1.5 3,023,913 + +0.1 3,023,913 + +0.2 3,023,913 + +1.2 3,023,913 + -0.1 3,023,913 + -0.1 3,023,913 + +0.7 3,023,914 - -0.4 3,023,934 + +0.1 3,023,934 + -0.4 3,023,934 + -0.8 3,023,935 - -1.4 3,023,935 - -0.8 3,023,935 - -0.4 3,023,935 - +0.3 3,023,935 - +0.5 3,023,935 - +0.8 3,023,936 + -0.5 3,023,936 + -0.4 3,023,936 + +1.7 3,023,938 + +0.2 3,023,938 + -0.4 3,023,939 - -0.9 3,023,939 - -0.9 3,024,002 + +0.4 3,024,002 + +0.2 3,024,002 + +0.2 3,024,002 + -0.7 3,024,003 - +0.1 3,024,003 - +1.0 3,024,003 - +0.6 3,024,044 + +0.9 3,024,044 + -1.6 3,024,044 + +0.2 3,024,045 - +0.1 3,024,046 + +0.7 3,024,046 + -0.4 3,024,046 + +0.7 3,024,046 + -2.9 3,024,059 + +2.0 3,024,059 + +0.3 3,024,060 - +0.3 3,024,060 - -2.1 3,024,060 - +0.2 3,024,080 + +0.8 3,024,080 + +0.5 3,024,086 - -0.7 3,024,138 - -0.2 3,024,211 - ECD_02885 0.18 -0.7 3,024,357 + ECD_02885 0.36 +0.7 3,024,357 + ECD_02885 0.36 +1.0 3,024,357 + ECD_02885 0.36 +0.4 3,024,373 + ECD_02885 0.38 -0.8 3,024,373 + ECD_02885 0.38 -0.1 3,024,373 + ECD_02885 0.38 -0.5 3,024,373 + ECD_02885 0.38 -0.1 3,024,406 - ECD_02885 0.42 +0.8 3,024,452 - ECD_02885 0.47 +0.3 3,024,532 + ECD_02885 0.57 -1.4 3,024,575 - ECD_02885 0.62 +1.0 3,024,681 - ECD_02885 0.75 -0.7 3,024,681 - ECD_02885 0.75 -0.5 3,024,685 - ECD_02885 0.75 -1.5 3,024,770 + ECD_02885 0.86 +0.6 3,024,912 - -1.3 3,024,946 - +0.3
Or see this region's nucleotide sequence