Strain Fitness in Escherichia coli BL21 around ECD_02652

Experiment: Control_TnD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02650 and ECD_02651 overlap by 50 nucleotidesECD_02651 and ECD_02652 are separated by 3 nucleotidesECD_02652 and ECD_02653 are separated by 469 nucleotides ECD_02650: ECD_02650 - D-ribose-binding periplasmic protein, at 2,769,884 to 2,770,957 _02650 ECD_02651: ECD_02651 - Ribose transport system permease protein rbsC, at 2,770,908 to 2,771,891 _02651 ECD_02652: ECD_02652 - hypothetical protein, at 2,771,895 to 2,773,394 _02652 ECD_02653: ECD_02653 - L-fucose isomerase, at 2,773,864 to 2,775,639 _02653 Position (kb) 2771 2772 2773 2774Strain fitness (log2 ratio) -1 0 1at 2770.905 kb on - strandat 2770.932 kb on - strandat 2771.136 kb on + strand, within ECD_02651at 2771.137 kb on - strand, within ECD_02651at 2771.197 kb on - strand, within ECD_02651at 2771.197 kb on - strand, within ECD_02651at 2771.278 kb on - strand, within ECD_02651at 2771.285 kb on - strand, within ECD_02651at 2771.320 kb on + strand, within ECD_02651at 2771.321 kb on - strand, within ECD_02651at 2771.321 kb on - strand, within ECD_02651at 2771.337 kb on + strand, within ECD_02651at 2771.426 kb on - strand, within ECD_02651at 2771.454 kb on - strand, within ECD_02651at 2771.460 kb on - strand, within ECD_02651at 2771.496 kb on - strand, within ECD_02651at 2771.496 kb on - strand, within ECD_02651at 2771.573 kb on + strand, within ECD_02651at 2771.577 kb on - strand, within ECD_02651at 2771.703 kb on - strand, within ECD_02651at 2772.569 kb on + strand, within ECD_02652at 2772.606 kb on + strand, within ECD_02652at 2772.715 kb on + strand, within ECD_02652at 2772.734 kb on - strand, within ECD_02652at 2772.734 kb on - strand, within ECD_02652at 2772.772 kb on - strand, within ECD_02652at 2772.803 kb on - strand, within ECD_02652at 2772.884 kb on + strand, within ECD_02652at 2773.455 kb on - strandat 2773.565 kb on - strandat 2773.755 kb on + strandat 2773.959 kb on + strandat 2773.959 kb on + strandat 2774.102 kb on + strand, within ECD_02653at 2774.103 kb on - strand, within ECD_02653at 2774.103 kb on - strand, within ECD_02653at 2774.115 kb on + strand, within ECD_02653at 2774.138 kb on - strand, within ECD_02653at 2774.278 kb on + strand, within ECD_02653at 2774.278 kb on + strand, within ECD_02653at 2774.279 kb on - strand, within ECD_02653at 2774.385 kb on + strand, within ECD_02653at 2774.385 kb on + strand, within ECD_02653at 2774.385 kb on + strand, within ECD_02653at 2774.386 kb on - strand, within ECD_02653at 2774.392 kb on + strand, within ECD_02653at 2774.392 kb on + strand, within ECD_02653at 2774.392 kb on + strand, within ECD_02653at 2774.392 kb on + strand, within ECD_02653at 2774.392 kb on + strand, within ECD_02653at 2774.392 kb on + strand, within ECD_02653at 2774.393 kb on - strand, within ECD_02653at 2774.393 kb on - strand, within ECD_02653

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnD
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2,770,905 - -0.4
2,770,932 - -0.5
2,771,136 + ECD_02651 0.23 -0.1
2,771,137 - ECD_02651 0.23 +0.2
2,771,197 - ECD_02651 0.29 -0.2
2,771,197 - ECD_02651 0.29 +0.8
2,771,278 - ECD_02651 0.38 +0.1
2,771,285 - ECD_02651 0.38 -1.2
2,771,320 + ECD_02651 0.42 +0.0
2,771,321 - ECD_02651 0.42 -0.5
2,771,321 - ECD_02651 0.42 +0.1
2,771,337 + ECD_02651 0.44 +0.9
2,771,426 - ECD_02651 0.53 -0.4
2,771,454 - ECD_02651 0.55 +0.2
2,771,460 - ECD_02651 0.56 +0.3
2,771,496 - ECD_02651 0.60 -0.2
2,771,496 - ECD_02651 0.60 +0.9
2,771,573 + ECD_02651 0.68 -0.3
2,771,577 - ECD_02651 0.68 +0.1
2,771,703 - ECD_02651 0.81 +0.7
2,772,569 + ECD_02652 0.45 +1.3
2,772,606 + ECD_02652 0.47 +1.2
2,772,715 + ECD_02652 0.55 +1.4
2,772,734 - ECD_02652 0.56 +1.0
2,772,734 - ECD_02652 0.56 +0.3
2,772,772 - ECD_02652 0.58 +0.2
2,772,803 - ECD_02652 0.61 +1.0
2,772,884 + ECD_02652 0.66 -1.0
2,773,455 - -1.5
2,773,565 - -0.2
2,773,755 + -0.2
2,773,959 + +0.8
2,773,959 + +0.6
2,774,102 + ECD_02653 0.13 +0.2
2,774,103 - ECD_02653 0.13 -0.3
2,774,103 - ECD_02653 0.13 +0.9
2,774,115 + ECD_02653 0.14 -0.8
2,774,138 - ECD_02653 0.15 +0.0
2,774,278 + ECD_02653 0.23 +0.5
2,774,278 + ECD_02653 0.23 +0.0
2,774,279 - ECD_02653 0.23 -0.7
2,774,385 + ECD_02653 0.29 -0.1
2,774,385 + ECD_02653 0.29 -0.4
2,774,385 + ECD_02653 0.29 +0.6
2,774,386 - ECD_02653 0.29 +0.6
2,774,392 + ECD_02653 0.30 -1.0
2,774,392 + ECD_02653 0.30 -0.7
2,774,392 + ECD_02653 0.30 -1.0
2,774,392 + ECD_02653 0.30 -1.3
2,774,392 + ECD_02653 0.30 -1.2
2,774,392 + ECD_02653 0.30 -0.6
2,774,393 - ECD_02653 0.30 +0.8
2,774,393 - ECD_02653 0.30 -1.0

Or see this region's nucleotide sequence