Experiment: Control_TnD
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02274 and ECD_02275 are separated by 217 nucleotides ECD_02275 and ECD_02276 are separated by 17 nucleotides
ECD_02274: ECD_02274 - dsd operon activator; autorepressor, at 2,354,582 to 2,355,517
_02274
ECD_02275: ECD_02275 - D-serine transporter, at 2,355,735 to 2,357,072
_02275
ECD_02276: ECD_02276 - D-serine dehydratase, at 2,357,090 to 2,358,418
_02276
Position (kb)
2355
2356
2357
2358 Strain fitness (log2 ratio)
-2
-1
0
1 at 2354.792 kb on - strand, within ECD_02274 at 2354.866 kb on + strand, within ECD_02274 at 2354.866 kb on + strand, within ECD_02274 at 2354.924 kb on - strand, within ECD_02274 at 2354.974 kb on - strand, within ECD_02274 at 2354.988 kb on - strand, within ECD_02274 at 2354.988 kb on - strand, within ECD_02274 at 2354.988 kb on - strand, within ECD_02274 at 2354.988 kb on - strand, within ECD_02274 at 2355.055 kb on - strand, within ECD_02274 at 2355.055 kb on - strand, within ECD_02274 at 2355.055 kb on - strand, within ECD_02274 at 2355.055 kb on - strand, within ECD_02274 at 2355.152 kb on + strand, within ECD_02274 at 2355.273 kb on - strand, within ECD_02274 at 2355.381 kb on - strand, within ECD_02274 at 2355.734 kb on + strand at 2355.784 kb on + strand at 2356.153 kb on + strand, within ECD_02275 at 2356.178 kb on + strand, within ECD_02275 at 2356.228 kb on + strand, within ECD_02275 at 2356.230 kb on + strand, within ECD_02275 at 2356.231 kb on - strand, within ECD_02275 at 2356.231 kb on - strand, within ECD_02275 at 2356.242 kb on - strand, within ECD_02275 at 2356.439 kb on - strand, within ECD_02275 at 2356.445 kb on - strand, within ECD_02275 at 2356.510 kb on - strand, within ECD_02275 at 2356.575 kb on + strand, within ECD_02275 at 2356.575 kb on + strand, within ECD_02275 at 2356.575 kb on + strand, within ECD_02275 at 2356.586 kb on + strand, within ECD_02275 at 2356.599 kb on - strand, within ECD_02275 at 2356.599 kb on - strand, within ECD_02275 at 2356.599 kb on - strand, within ECD_02275 at 2356.626 kb on - strand, within ECD_02275 at 2356.647 kb on - strand, within ECD_02275 at 2356.733 kb on + strand, within ECD_02275 at 2356.745 kb on + strand, within ECD_02275 at 2356.787 kb on + strand, within ECD_02275 at 2356.994 kb on + strand at 2356.994 kb on + strand at 2357.003 kb on + strand at 2357.004 kb on - strand at 2357.136 kb on + strand at 2357.205 kb on + strand at 2357.439 kb on + strand, within ECD_02276 at 2357.525 kb on + strand, within ECD_02276 at 2357.656 kb on + strand, within ECD_02276 at 2357.656 kb on + strand, within ECD_02276 at 2357.656 kb on + strand, within ECD_02276 at 2357.761 kb on + strand, within ECD_02276 at 2357.794 kb on + strand, within ECD_02276 at 2358.022 kb on + strand, within ECD_02276 at 2358.022 kb on + strand, within ECD_02276 at 2358.023 kb on - strand, within ECD_02276 at 2358.030 kb on + strand, within ECD_02276 at 2358.040 kb on + strand, within ECD_02276 at 2358.041 kb on - strand, within ECD_02276 at 2358.048 kb on + strand, within ECD_02276
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnD remove 2,354,792 - ECD_02274 0.22 -0.5 2,354,866 + ECD_02274 0.30 -0.5 2,354,866 + ECD_02274 0.30 -1.6 2,354,924 - ECD_02274 0.37 -1.0 2,354,974 - ECD_02274 0.42 +0.1 2,354,988 - ECD_02274 0.43 +0.8 2,354,988 - ECD_02274 0.43 +0.4 2,354,988 - ECD_02274 0.43 -0.3 2,354,988 - ECD_02274 0.43 +1.4 2,355,055 - ECD_02274 0.51 +0.4 2,355,055 - ECD_02274 0.51 -0.2 2,355,055 - ECD_02274 0.51 -2.0 2,355,055 - ECD_02274 0.51 +0.8 2,355,152 + ECD_02274 0.61 -2.0 2,355,273 - ECD_02274 0.74 +0.0 2,355,381 - ECD_02274 0.85 -0.7 2,355,734 + -0.4 2,355,784 + -2.2 2,356,153 + ECD_02275 0.31 -0.3 2,356,178 + ECD_02275 0.33 -1.0 2,356,228 + ECD_02275 0.37 -1.9 2,356,230 + ECD_02275 0.37 +0.0 2,356,231 - ECD_02275 0.37 +0.4 2,356,231 - ECD_02275 0.37 -1.6 2,356,242 - ECD_02275 0.38 -0.1 2,356,439 - ECD_02275 0.53 +0.5 2,356,445 - ECD_02275 0.53 -1.1 2,356,510 - ECD_02275 0.58 +0.6 2,356,575 + ECD_02275 0.63 -0.3 2,356,575 + ECD_02275 0.63 +0.4 2,356,575 + ECD_02275 0.63 -0.8 2,356,586 + ECD_02275 0.64 +0.4 2,356,599 - ECD_02275 0.65 -0.0 2,356,599 - ECD_02275 0.65 -0.1 2,356,599 - ECD_02275 0.65 -0.5 2,356,626 - ECD_02275 0.67 -0.6 2,356,647 - ECD_02275 0.68 -0.2 2,356,733 + ECD_02275 0.75 +0.4 2,356,745 + ECD_02275 0.75 +0.1 2,356,787 + ECD_02275 0.79 -0.2 2,356,994 + +0.4 2,356,994 + +0.4 2,357,003 + -1.0 2,357,004 - +0.6 2,357,136 + -1.1 2,357,205 + -1.1 2,357,439 + ECD_02276 0.26 -0.5 2,357,525 + ECD_02276 0.33 -0.6 2,357,656 + ECD_02276 0.43 +0.1 2,357,656 + ECD_02276 0.43 +0.1 2,357,656 + ECD_02276 0.43 -0.2 2,357,761 + ECD_02276 0.50 +0.2 2,357,794 + ECD_02276 0.53 -0.1 2,358,022 + ECD_02276 0.70 -0.2 2,358,022 + ECD_02276 0.70 -0.4 2,358,023 - ECD_02276 0.70 +0.0 2,358,030 + ECD_02276 0.71 +0.3 2,358,040 + ECD_02276 0.71 +0.0 2,358,041 - ECD_02276 0.72 -2.4 2,358,048 + ECD_02276 0.72 -0.3
Or see this region's nucleotide sequence