Strain Fitness in Escherichia coli BL21 around ECD_02275

Experiment: Control_TnD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02274 and ECD_02275 are separated by 217 nucleotidesECD_02275 and ECD_02276 are separated by 17 nucleotides ECD_02274: ECD_02274 - dsd operon activator; autorepressor, at 2,354,582 to 2,355,517 _02274 ECD_02275: ECD_02275 - D-serine transporter, at 2,355,735 to 2,357,072 _02275 ECD_02276: ECD_02276 - D-serine dehydratase, at 2,357,090 to 2,358,418 _02276 Position (kb) 2355 2356 2357 2358Strain fitness (log2 ratio) -2 -1 0 1at 2354.792 kb on - strand, within ECD_02274at 2354.866 kb on + strand, within ECD_02274at 2354.866 kb on + strand, within ECD_02274at 2354.924 kb on - strand, within ECD_02274at 2354.974 kb on - strand, within ECD_02274at 2354.988 kb on - strand, within ECD_02274at 2354.988 kb on - strand, within ECD_02274at 2354.988 kb on - strand, within ECD_02274at 2354.988 kb on - strand, within ECD_02274at 2355.055 kb on - strand, within ECD_02274at 2355.055 kb on - strand, within ECD_02274at 2355.055 kb on - strand, within ECD_02274at 2355.055 kb on - strand, within ECD_02274at 2355.152 kb on + strand, within ECD_02274at 2355.273 kb on - strand, within ECD_02274at 2355.381 kb on - strand, within ECD_02274at 2355.734 kb on + strandat 2355.784 kb on + strandat 2356.153 kb on + strand, within ECD_02275at 2356.178 kb on + strand, within ECD_02275at 2356.228 kb on + strand, within ECD_02275at 2356.230 kb on + strand, within ECD_02275at 2356.231 kb on - strand, within ECD_02275at 2356.231 kb on - strand, within ECD_02275at 2356.242 kb on - strand, within ECD_02275at 2356.439 kb on - strand, within ECD_02275at 2356.445 kb on - strand, within ECD_02275at 2356.510 kb on - strand, within ECD_02275at 2356.575 kb on + strand, within ECD_02275at 2356.575 kb on + strand, within ECD_02275at 2356.575 kb on + strand, within ECD_02275at 2356.586 kb on + strand, within ECD_02275at 2356.599 kb on - strand, within ECD_02275at 2356.599 kb on - strand, within ECD_02275at 2356.599 kb on - strand, within ECD_02275at 2356.626 kb on - strand, within ECD_02275at 2356.647 kb on - strand, within ECD_02275at 2356.733 kb on + strand, within ECD_02275at 2356.745 kb on + strand, within ECD_02275at 2356.787 kb on + strand, within ECD_02275at 2356.994 kb on + strandat 2356.994 kb on + strandat 2357.003 kb on + strandat 2357.004 kb on - strandat 2357.136 kb on + strandat 2357.205 kb on + strandat 2357.439 kb on + strand, within ECD_02276at 2357.525 kb on + strand, within ECD_02276at 2357.656 kb on + strand, within ECD_02276at 2357.656 kb on + strand, within ECD_02276at 2357.656 kb on + strand, within ECD_02276at 2357.761 kb on + strand, within ECD_02276at 2357.794 kb on + strand, within ECD_02276at 2358.022 kb on + strand, within ECD_02276at 2358.022 kb on + strand, within ECD_02276at 2358.023 kb on - strand, within ECD_02276at 2358.030 kb on + strand, within ECD_02276at 2358.040 kb on + strand, within ECD_02276at 2358.041 kb on - strand, within ECD_02276at 2358.048 kb on + strand, within ECD_02276

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnD
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2,354,792 - ECD_02274 0.22 -0.5
2,354,866 + ECD_02274 0.30 -0.5
2,354,866 + ECD_02274 0.30 -1.6
2,354,924 - ECD_02274 0.37 -1.0
2,354,974 - ECD_02274 0.42 +0.1
2,354,988 - ECD_02274 0.43 +0.8
2,354,988 - ECD_02274 0.43 +0.4
2,354,988 - ECD_02274 0.43 -0.3
2,354,988 - ECD_02274 0.43 +1.4
2,355,055 - ECD_02274 0.51 +0.4
2,355,055 - ECD_02274 0.51 -0.2
2,355,055 - ECD_02274 0.51 -2.0
2,355,055 - ECD_02274 0.51 +0.8
2,355,152 + ECD_02274 0.61 -2.0
2,355,273 - ECD_02274 0.74 +0.0
2,355,381 - ECD_02274 0.85 -0.7
2,355,734 + -0.4
2,355,784 + -2.2
2,356,153 + ECD_02275 0.31 -0.3
2,356,178 + ECD_02275 0.33 -1.0
2,356,228 + ECD_02275 0.37 -1.9
2,356,230 + ECD_02275 0.37 +0.0
2,356,231 - ECD_02275 0.37 +0.4
2,356,231 - ECD_02275 0.37 -1.6
2,356,242 - ECD_02275 0.38 -0.1
2,356,439 - ECD_02275 0.53 +0.5
2,356,445 - ECD_02275 0.53 -1.1
2,356,510 - ECD_02275 0.58 +0.6
2,356,575 + ECD_02275 0.63 -0.3
2,356,575 + ECD_02275 0.63 +0.4
2,356,575 + ECD_02275 0.63 -0.8
2,356,586 + ECD_02275 0.64 +0.4
2,356,599 - ECD_02275 0.65 -0.0
2,356,599 - ECD_02275 0.65 -0.1
2,356,599 - ECD_02275 0.65 -0.5
2,356,626 - ECD_02275 0.67 -0.6
2,356,647 - ECD_02275 0.68 -0.2
2,356,733 + ECD_02275 0.75 +0.4
2,356,745 + ECD_02275 0.75 +0.1
2,356,787 + ECD_02275 0.79 -0.2
2,356,994 + +0.4
2,356,994 + +0.4
2,357,003 + -1.0
2,357,004 - +0.6
2,357,136 + -1.1
2,357,205 + -1.1
2,357,439 + ECD_02276 0.26 -0.5
2,357,525 + ECD_02276 0.33 -0.6
2,357,656 + ECD_02276 0.43 +0.1
2,357,656 + ECD_02276 0.43 +0.1
2,357,656 + ECD_02276 0.43 -0.2
2,357,761 + ECD_02276 0.50 +0.2
2,357,794 + ECD_02276 0.53 -0.1
2,358,022 + ECD_02276 0.70 -0.2
2,358,022 + ECD_02276 0.70 -0.4
2,358,023 - ECD_02276 0.70 +0.0
2,358,030 + ECD_02276 0.71 +0.3
2,358,040 + ECD_02276 0.71 +0.0
2,358,041 - ECD_02276 0.72 -2.4
2,358,048 + ECD_02276 0.72 -0.3

Or see this region's nucleotide sequence