Experiment: Control_TnD
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02249 and ECD_02250 are separated by 120 nucleotides ECD_02250 and ECD_02251 are separated by 33 nucleotides ECD_02251 and ECD_02252 overlap by 1 nucleotides
ECD_02249: ECD_02249 - fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme, at 2,329,017 to 2,331,023
_02249
ECD_02250: ECD_02250 - uncharacterized protein, at 2,331,144 to 2,331,422
_02250
ECD_02251: ECD_02251 - Elongation Factor P Lys34 hydroxylase, at 2,331,456 to 2,332,004
_02251
ECD_02252: ECD_02252 - TauE/TSUP family inner membrane protein, at 2,332,004 to 2,332,813
_02252
Position (kb)
2331
2332 Strain fitness (log2 ratio)
-2
-1
0
1 at 2330.210 kb on + strand, within ECD_02249 at 2330.211 kb on - strand, within ECD_02249 at 2330.383 kb on + strand, within ECD_02249 at 2330.565 kb on - strand, within ECD_02249 at 2330.846 kb on + strand at 2330.860 kb on + strand at 2331.073 kb on + strand at 2331.073 kb on + strand at 2331.074 kb on - strand at 2331.261 kb on - strand, within ECD_02250 at 2331.512 kb on - strand, within ECD_02251 at 2331.515 kb on - strand, within ECD_02251 at 2331.572 kb on - strand, within ECD_02251 at 2331.592 kb on - strand, within ECD_02251 at 2331.880 kb on - strand, within ECD_02251 at 2331.902 kb on - strand, within ECD_02251 at 2331.939 kb on - strand, within ECD_02251 at 2331.963 kb on - strand at 2332.005 kb on + strand at 2332.006 kb on - strand at 2332.006 kb on - strand at 2332.056 kb on - strand at 2332.395 kb on + strand, within ECD_02252
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnD remove 2,330,210 + ECD_02249 0.59 -0.9 2,330,211 - ECD_02249 0.59 +0.6 2,330,383 + ECD_02249 0.68 +0.8 2,330,565 - ECD_02249 0.77 +0.5 2,330,846 + -0.3 2,330,860 + -0.4 2,331,073 + +0.6 2,331,073 + +0.4 2,331,074 - -0.7 2,331,261 - ECD_02250 0.42 -1.0 2,331,512 - ECD_02251 0.10 -0.3 2,331,515 - ECD_02251 0.11 -1.5 2,331,572 - ECD_02251 0.21 +1.7 2,331,592 - ECD_02251 0.25 -0.2 2,331,880 - ECD_02251 0.77 -2.0 2,331,902 - ECD_02251 0.81 +0.3 2,331,939 - ECD_02251 0.88 +0.5 2,331,963 - -1.5 2,332,005 + -0.3 2,332,006 - +0.3 2,332,006 - -0.3 2,332,056 - -1.3 2,332,395 + ECD_02252 0.48 -0.6
Or see this region's nucleotide sequence