Strain Fitness in Escherichia coli BL21 around ECD_02248

Experiment: Control_TnD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02247 and ECD_02248 are separated by 264 nucleotidesECD_02248 and ECD_02249 are separated by 158 nucleotides ECD_02247: ECD_02247 - putative arabinose efflux transporter, at 2,326,195 to 2,327,373 _02247 ECD_02248: ECD_02248 - 3-oxoacyl-[acyl-carrier-protein] synthase I, at 2,327,638 to 2,328,858 _02248 ECD_02249: ECD_02249 - fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme, at 2,329,017 to 2,331,023 _02249 Position (kb) 2327 2328 2329Strain fitness (log2 ratio) -1 0 1at 2326.694 kb on - strand, within ECD_02247at 2326.817 kb on - strand, within ECD_02247at 2326.817 kb on - strand, within ECD_02247at 2326.858 kb on - strand, within ECD_02247at 2327.107 kb on + strand, within ECD_02247at 2327.107 kb on + strand, within ECD_02247at 2327.108 kb on - strand, within ECD_02247at 2327.291 kb on + strandat 2327.291 kb on + strandat 2327.292 kb on - strandat 2327.292 kb on - strandat 2327.292 kb on - strandat 2327.292 kb on - strandat 2327.408 kb on - strandat 2327.630 kb on - strandat 2327.640 kb on - strandat 2328.883 kb on - strandat 2328.888 kb on - strandat 2328.888 kb on - strandat 2328.888 kb on - strandat 2328.945 kb on + strandat 2328.945 kb on + strandat 2328.948 kb on + strandat 2329.014 kb on + strandat 2329.034 kb on - strandat 2329.099 kb on - strandat 2329.291 kb on + strand, within ECD_02249at 2329.646 kb on + strand, within ECD_02249at 2329.646 kb on + strand, within ECD_02249at 2329.647 kb on - strand, within ECD_02249at 2329.760 kb on - strand, within ECD_02249at 2329.835 kb on + strand, within ECD_02249

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnD
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2,326,694 - ECD_02247 0.42 +0.3
2,326,817 - ECD_02247 0.53 +0.0
2,326,817 - ECD_02247 0.53 +0.9
2,326,858 - ECD_02247 0.56 -0.3
2,327,107 + ECD_02247 0.77 -0.2
2,327,107 + ECD_02247 0.77 +1.5
2,327,108 - ECD_02247 0.77 +0.2
2,327,291 + -0.3
2,327,291 + +0.5
2,327,292 - +0.9
2,327,292 - -0.1
2,327,292 - -1.5
2,327,292 - -0.7
2,327,408 - -0.5
2,327,630 - +0.5
2,327,640 - -0.5
2,328,883 - -0.8
2,328,888 - -0.8
2,328,888 - -0.5
2,328,888 - +0.3
2,328,945 + +0.1
2,328,945 + -0.1
2,328,948 + +0.7
2,329,014 + +0.6
2,329,034 - +0.7
2,329,099 - +0.6
2,329,291 + ECD_02249 0.14 -0.5
2,329,646 + ECD_02249 0.31 +0.2
2,329,646 + ECD_02249 0.31 +0.9
2,329,647 - ECD_02249 0.31 -0.5
2,329,760 - ECD_02249 0.37 +1.1
2,329,835 + ECD_02249 0.41 -0.3

Or see this region's nucleotide sequence