Experiment: Control_TnD
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02028 and ECD_02029 overlap by 27 nucleotides ECD_02029 and ECD_02030 are separated by 51 nucleotides ECD_02030 and ECD_02031 are separated by 64 nucleotides ECD_02031 and ECD_02032 overlap by 4 nucleotides
ECD_02028: ECD_02028 - putative kinase, at 2,078,891 to 2,079,856
_02028
ECD_02029: ECD_02029 - putative DNA-binding transcriptional regulator, at 2,079,830 to 2,080,576
_02029
ECD_02030: ECD_02030 - putative family 25 glycosyl hydrolase, at 2,080,628 to 2,081,446
_02030
ECD_02031: ECD_02031 - hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase, at 2,081,511 to 2,082,311
_02031
ECD_02032: ECD_02032 - hydoxyethylthiazole kinase, at 2,082,308 to 2,083,096
_02032
Position (kb)
2080
2081
2082 Strain fitness (log2 ratio)
-1
0
1
2 at 2079.714 kb on + strand, within ECD_02028 at 2079.832 kb on - strand at 2079.832 kb on - strand at 2079.854 kb on + strand at 2079.889 kb on + strand at 2080.499 kb on - strand, within ECD_02029 at 2080.685 kb on - strand at 2080.929 kb on - strand, within ECD_02030 at 2081.055 kb on + strand, within ECD_02030 at 2081.056 kb on - strand, within ECD_02030 at 2081.094 kb on - strand, within ECD_02030 at 2081.254 kb on - strand, within ECD_02030 at 2081.313 kb on + strand, within ECD_02030 at 2081.439 kb on - strand at 2081.498 kb on + strand at 2081.500 kb on + strand at 2081.503 kb on + strand at 2081.503 kb on + strand at 2081.634 kb on - strand, within ECD_02031 at 2081.673 kb on - strand, within ECD_02031 at 2081.673 kb on - strand, within ECD_02031 at 2082.155 kb on - strand, within ECD_02031 at 2082.166 kb on - strand, within ECD_02031 at 2082.201 kb on - strand, within ECD_02031
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnD remove 2,079,714 + ECD_02028 0.85 -0.6 2,079,832 - -0.6 2,079,832 - +0.5 2,079,854 + +0.7 2,079,889 + -0.6 2,080,499 - ECD_02029 0.90 -0.8 2,080,685 - +0.2 2,080,929 - ECD_02030 0.37 +0.2 2,081,055 + ECD_02030 0.52 +0.9 2,081,056 - ECD_02030 0.52 -0.1 2,081,094 - ECD_02030 0.57 +0.4 2,081,254 - ECD_02030 0.76 +2.4 2,081,313 + ECD_02030 0.84 +0.4 2,081,439 - +0.2 2,081,498 + -0.3 2,081,500 + +0.5 2,081,503 + +0.5 2,081,503 + +0.4 2,081,634 - ECD_02031 0.15 -0.1 2,081,673 - ECD_02031 0.20 +0.8 2,081,673 - ECD_02031 0.20 +0.2 2,082,155 - ECD_02031 0.80 +0.2 2,082,166 - ECD_02031 0.82 -0.2 2,082,201 - ECD_02031 0.86 +0.4
Or see this region's nucleotide sequence