Experiment: Control_TnD
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01632 and ECD_01633 are separated by 39 nucleotides ECD_01633 and ECD_01634 are separated by 214 nucleotides ECD_01634 and ECD_01635 are separated by 40 nucleotides
ECD_01632: ECD_01632 - cyclopropane fatty acyl phospholipid synthase, SAM-dependent, at 1,686,682 to 1,687,830
_01632
ECD_01633: ECD_01633 - riboflavin synthase, alpha subunit, at 1,687,870 to 1,688,511
_01633
ECD_01634: ECD_01634 - multidrug efflux system transporter, at 1,688,726 to 1,690,099
_01634
ECD_01635: ECD_01635 - autotransporter adhesin-related protein, at 1,690,140 to 1,691,396
_01635
Position (kb)
1688
1689
1690
1691 Strain fitness (log2 ratio)
-1
0
1 at 1688.535 kb on - strand at 1688.700 kb on + strand at 1688.876 kb on - strand, within ECD_01634 at 1688.882 kb on - strand, within ECD_01634 at 1688.882 kb on - strand, within ECD_01634 at 1689.259 kb on + strand, within ECD_01634 at 1689.259 kb on + strand, within ECD_01634 at 1689.357 kb on - strand, within ECD_01634 at 1689.866 kb on + strand, within ECD_01634 at 1690.642 kb on - strand, within ECD_01635 at 1690.779 kb on - strand, within ECD_01635 at 1690.806 kb on - strand, within ECD_01635 at 1690.933 kb on - strand, within ECD_01635
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnD remove 1,688,535 - -0.3 1,688,700 + +0.1 1,688,876 - ECD_01634 0.11 -0.2 1,688,882 - ECD_01634 0.11 +0.2 1,688,882 - ECD_01634 0.11 -0.5 1,689,259 + ECD_01634 0.39 +0.8 1,689,259 + ECD_01634 0.39 -1.5 1,689,357 - ECD_01634 0.46 +0.1 1,689,866 + ECD_01634 0.83 +0.6 1,690,642 - ECD_01635 0.40 +0.1 1,690,779 - ECD_01635 0.51 -0.8 1,690,806 - ECD_01635 0.53 -0.5 1,690,933 - ECD_01635 0.63 +0.4
Or see this region's nucleotide sequence