Strain Fitness in Escherichia coli BL21 around ECD_01607

Experiment: Control_TnD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01605 and ECD_01606 are separated by 43 nucleotidesECD_01606 and ECD_01607 are separated by 58 nucleotidesECD_01607 and ECD_01608 are separated by 128 nucleotidesECD_01608 and ECD_01609 are separated by 58 nucleotides ECD_01605: ECD_01605 - glutathionine S-transferase, at 1,659,573 to 1,660,178 _01605 ECD_01606: ECD_01606 - pyridoxamine kinase, at 1,660,222 to 1,661,085 _01606 ECD_01607: ECD_01607 - tyrosyl-tRNA synthetase, at 1,661,144 to 1,662,418 _01607 ECD_01608: ECD_01608 - pyridoxine 5'-phosphate oxidase, at 1,662,547 to 1,663,203 _01608 ECD_01609: ECD_01609 - inhibitor of c-type lysozyme, membrane-bound; putative lipoprotein, at 1,663,262 to 1,663,591 _01609 Position (kb) 1661 1662 1663Strain fitness (log2 ratio) -1 0 1at 1660.613 kb on - strand, within ECD_01606at 1660.631 kb on - strand, within ECD_01606at 1660.873 kb on - strand, within ECD_01606at 1661.046 kb on - strandat 1661.138 kb on - strandat 1662.495 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnD
remove
1,660,613 - ECD_01606 0.45 +0.8
1,660,631 - ECD_01606 0.47 +1.5
1,660,873 - ECD_01606 0.75 +0.5
1,661,046 - -0.2
1,661,138 - +0.7
1,662,495 - -0.0

Or see this region's nucleotide sequence