Strain Fitness in Escherichia coli BL21 around ECD_01369

Experiment: Control_TnD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01368 and ECD_01369 are separated by 271 nucleotidesECD_01369 and ECD_01370 are separated by 196 nucleotides ECD_01368: ECD_01368 - putative ATP-dependent helicase, at 1,436,345 to 1,440,247 _01368 ECD_01369: ECD_01369 - DUF218 superfamily protein, SAM-binding, at 1,440,519 to 1,441,319 _01369 ECD_01370: ECD_01370 - aldehyde dehydrogenase A, NAD-linked, at 1,441,516 to 1,442,955 _01370 Position (kb) 1440 1441 1442Strain fitness (log2 ratio) -1 0 1at 1439.680 kb on + strand, within ECD_01368at 1440.163 kb on + strandat 1440.214 kb on + strandat 1441.396 kb on - strandat 1441.539 kb on + strandat 1441.539 kb on + strandat 1441.544 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnD
remove
1,439,680 + ECD_01368 0.85 +0.5
1,440,163 + +0.7
1,440,214 + -0.5
1,441,396 - +0.3
1,441,539 + +0.9
1,441,539 + -1.6
1,441,544 - +0.5

Or see this region's nucleotide sequence