Strain Fitness in Escherichia coli BL21 around ECD_01176

Experiment: Control_TnD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01175 and ECD_01176 are separated by 227 nucleotidesECD_01176 and ECD_01177 are separated by 99 nucleotides ECD_01175: ECD_01175 - dihydroxyacetone kinase, PTS-dependent, dihydroxyacetone-binding subunit, at 1,237,916 to 1,238,986 _01175 ECD_01176: ECD_01176 - dhaKLM operon transcription activator, at 1,239,214 to 1,241,133 _01176 ECD_01177: ECD_01177 - putative adhesin, at 1,241,233 to 1,244,100 _01177 Position (kb) 1239 1240 1241 1242Strain fitness (log2 ratio) -1 0 1 2at 1238.453 kb on - strand, within ECD_01175at 1238.631 kb on - strand, within ECD_01175at 1239.005 kb on - strandat 1239.285 kb on + strandat 1239.360 kb on + strandat 1239.414 kb on + strand, within ECD_01176at 1239.414 kb on + strand, within ECD_01176at 1239.503 kb on + strand, within ECD_01176at 1239.532 kb on + strand, within ECD_01176at 1239.555 kb on + strand, within ECD_01176at 1239.579 kb on + strand, within ECD_01176at 1240.191 kb on + strand, within ECD_01176at 1240.348 kb on + strand, within ECD_01176at 1240.370 kb on + strand, within ECD_01176at 1240.372 kb on + strand, within ECD_01176at 1241.001 kb on + strandat 1241.542 kb on + strand, within ECD_01177at 1241.543 kb on - strand, within ECD_01177at 1241.569 kb on - strand, within ECD_01177at 1241.596 kb on - strand, within ECD_01177at 1241.619 kb on - strand, within ECD_01177at 1241.895 kb on - strand, within ECD_01177at 1241.906 kb on - strand, within ECD_01177at 1241.906 kb on - strand, within ECD_01177

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnD
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1,238,453 - ECD_01175 0.50 -0.1
1,238,631 - ECD_01175 0.67 +0.6
1,239,005 - -0.4
1,239,285 + +1.2
1,239,360 + +0.6
1,239,414 + ECD_01176 0.10 +0.1
1,239,414 + ECD_01176 0.10 +0.6
1,239,503 + ECD_01176 0.15 +0.1
1,239,532 + ECD_01176 0.17 +0.9
1,239,555 + ECD_01176 0.18 -0.1
1,239,579 + ECD_01176 0.19 +0.3
1,240,191 + ECD_01176 0.51 +1.1
1,240,348 + ECD_01176 0.59 +0.7
1,240,370 + ECD_01176 0.60 +0.6
1,240,372 + ECD_01176 0.60 +0.8
1,241,001 + -0.9
1,241,542 + ECD_01177 0.11 +1.3
1,241,543 - ECD_01177 0.11 +0.7
1,241,569 - ECD_01177 0.12 +0.6
1,241,596 - ECD_01177 0.13 +2.1
1,241,619 - ECD_01177 0.13 +1.1
1,241,895 - ECD_01177 0.23 -0.2
1,241,906 - ECD_01177 0.23 +0.4
1,241,906 - ECD_01177 0.23 +0.2

Or see this region's nucleotide sequence