Experiment: Control_TnD
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01074 and ECD_01075 are separated by 52 nucleotides ECD_01075 and ECD_01076 are separated by 11 nucleotides ECD_01076 and ECD_01077 overlap by 1 nucleotides
ECD_01074: ECD_01074 - flagellar component of cell-distal portion of basal-body rod, at 1,137,296 to 1,138,078
_01074
ECD_01075: ECD_01075 - flagellar protein of basal-body outer-membrane L ring, at 1,138,131 to 1,138,829
_01075
ECD_01076: ECD_01076 - putative flagellar basal body protein, at 1,138,841 to 1,139,938
_01076
ECD_01077: ECD_01077 - flagellar rod assembly protein and murein hydrolase; flagellum-specific muramidase, at 1,139,938 to 1,140,879
_01077
Position (kb)
1138
1139
1140 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1137.947 kb on + strand, within ECD_01074 at 1138.027 kb on + strand at 1138.151 kb on + strand at 1138.151 kb on + strand at 1138.155 kb on + strand at 1138.155 kb on + strand at 1138.308 kb on + strand, within ECD_01075 at 1138.308 kb on + strand, within ECD_01075 at 1138.430 kb on + strand, within ECD_01075 at 1138.451 kb on + strand, within ECD_01075 at 1138.556 kb on + strand, within ECD_01075 at 1138.556 kb on + strand, within ECD_01075 at 1138.556 kb on + strand, within ECD_01075 at 1138.749 kb on + strand, within ECD_01075 at 1138.764 kb on + strand at 1138.827 kb on + strand at 1138.863 kb on + strand at 1139.026 kb on + strand, within ECD_01076 at 1139.029 kb on + strand, within ECD_01076 at 1139.074 kb on + strand, within ECD_01076 at 1139.074 kb on + strand, within ECD_01076 at 1139.082 kb on + strand, within ECD_01076 at 1139.197 kb on + strand, within ECD_01076 at 1139.197 kb on + strand, within ECD_01076 at 1139.197 kb on + strand, within ECD_01076 at 1139.240 kb on + strand, within ECD_01076 at 1139.240 kb on + strand, within ECD_01076 at 1139.240 kb on + strand, within ECD_01076 at 1139.296 kb on + strand, within ECD_01076 at 1139.593 kb on + strand, within ECD_01076 at 1139.605 kb on + strand, within ECD_01076 at 1139.605 kb on + strand, within ECD_01076 at 1139.685 kb on + strand, within ECD_01076 at 1139.805 kb on + strand, within ECD_01076 at 1139.805 kb on + strand, within ECD_01076 at 1139.957 kb on + strand at 1139.999 kb on + strand at 1140.033 kb on + strand, within ECD_01077 at 1140.145 kb on + strand, within ECD_01077 at 1140.145 kb on + strand, within ECD_01077 at 1140.147 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.157 kb on + strand, within ECD_01077 at 1140.157 kb on + strand, within ECD_01077 at 1140.157 kb on + strand, within ECD_01077 at 1140.354 kb on + strand, within ECD_01077 at 1140.358 kb on + strand, within ECD_01077 at 1140.358 kb on + strand, within ECD_01077 at 1140.359 kb on - strand, within ECD_01077 at 1140.529 kb on + strand, within ECD_01077 at 1140.673 kb on + strand, within ECD_01077 at 1140.850 kb on + strand at 1140.881 kb on + strand at 1140.912 kb on + strand at 1140.912 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnD remove 1,137,947 + ECD_01074 0.83 -0.4 1,138,027 + -0.4 1,138,151 + +1.5 1,138,151 + -0.1 1,138,155 + -0.1 1,138,155 + -0.3 1,138,308 + ECD_01075 0.25 -0.2 1,138,308 + ECD_01075 0.25 -0.4 1,138,430 + ECD_01075 0.43 +0.5 1,138,451 + ECD_01075 0.46 -0.4 1,138,556 + ECD_01075 0.61 -1.4 1,138,556 + ECD_01075 0.61 +0.3 1,138,556 + ECD_01075 0.61 -0.1 1,138,749 + ECD_01075 0.88 +0.1 1,138,764 + +0.2 1,138,827 + -2.0 1,138,863 + +0.2 1,139,026 + ECD_01076 0.17 +0.2 1,139,029 + ECD_01076 0.17 +0.3 1,139,074 + ECD_01076 0.21 -0.2 1,139,074 + ECD_01076 0.21 +0.4 1,139,082 + ECD_01076 0.22 -0.5 1,139,197 + ECD_01076 0.32 -0.2 1,139,197 + ECD_01076 0.32 +0.3 1,139,197 + ECD_01076 0.32 +0.7 1,139,240 + ECD_01076 0.36 -0.9 1,139,240 + ECD_01076 0.36 -0.6 1,139,240 + ECD_01076 0.36 -0.4 1,139,296 + ECD_01076 0.41 -0.7 1,139,593 + ECD_01076 0.68 -1.2 1,139,605 + ECD_01076 0.70 -0.7 1,139,605 + ECD_01076 0.70 +0.2 1,139,685 + ECD_01076 0.77 -0.5 1,139,805 + ECD_01076 0.88 +0.4 1,139,805 + ECD_01076 0.88 -0.9 1,139,957 + -0.5 1,139,999 + +0.5 1,140,033 + ECD_01077 0.10 -0.2 1,140,145 + ECD_01077 0.22 -0.2 1,140,145 + ECD_01077 0.22 -0.4 1,140,147 + ECD_01077 0.22 +0.8 1,140,153 + ECD_01077 0.23 +0.8 1,140,153 + ECD_01077 0.23 +0.2 1,140,153 + ECD_01077 0.23 -0.8 1,140,153 + ECD_01077 0.23 +0.3 1,140,153 + ECD_01077 0.23 +0.8 1,140,153 + ECD_01077 0.23 +0.9 1,140,153 + ECD_01077 0.23 +0.7 1,140,157 + ECD_01077 0.23 -1.0 1,140,157 + ECD_01077 0.23 +1.0 1,140,157 + ECD_01077 0.23 -0.2 1,140,354 + ECD_01077 0.44 +0.6 1,140,358 + ECD_01077 0.45 +0.1 1,140,358 + ECD_01077 0.45 +0.5 1,140,359 - ECD_01077 0.45 +2.5 1,140,529 + ECD_01077 0.63 +1.9 1,140,673 + ECD_01077 0.78 +1.4 1,140,850 + -0.1 1,140,881 + -0.1 1,140,912 + -0.7 1,140,912 + +0.1
Or see this region's nucleotide sequence