Experiment: Control_TnD
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00915 and ECD_00916 are separated by 159 nucleotides ECD_00916 and ECD_00917 are separated by 207 nucleotides ECD_00917 and ECD_00918 are separated by 36 nucleotides
ECD_00915: ECD_00915 - 30S ribosomal subunit protein S1, at 967,085 to 968,758
_00915
ECD_00916: ECD_00916 - integration host factor (IHF), DNA-binding protein, beta subunit, at 968,918 to 969,202
_00916
ECD_00917: ECD_00917 - ComEC family inner membrane protein, at 969,410 to 971,674
_00917
ECD_00918: ECD_00918 - lipid ABC transporter permease/ATPase, at 971,711 to 973,459
_00918
Position (kb) 969
970
971
972 Strain fitness (log2 ratio) -2
-1
0
1 at 968.802 kb on + strand at 968.863 kb on + strand at 969.143 kb on + strand, within ECD_00916 at 969.433 kb on - strand at 969.433 kb on - strand at 969.433 kb on - strand at 969.439 kb on - strand at 969.533 kb on - strand at 969.592 kb on - strand at 969.727 kb on - strand, within ECD_00917 at 970.259 kb on - strand, within ECD_00917 at 970.297 kb on - strand, within ECD_00917 at 970.546 kb on - strand, within ECD_00917 at 970.591 kb on + strand, within ECD_00917 at 970.592 kb on - strand, within ECD_00917 at 970.592 kb on - strand, within ECD_00917 at 970.609 kb on + strand, within ECD_00917 at 970.681 kb on - strand, within ECD_00917 at 970.806 kb on + strand, within ECD_00917 at 970.914 kb on - strand, within ECD_00917 at 971.048 kb on - strand, within ECD_00917 at 971.048 kb on - strand, within ECD_00917 at 971.122 kb on + strand, within ECD_00917 at 971.123 kb on - strand, within ECD_00917 at 971.123 kb on - strand, within ECD_00917 at 971.124 kb on + strand, within ECD_00917 at 971.124 kb on + strand, within ECD_00917 at 971.124 kb on + strand, within ECD_00917 at 971.125 kb on - strand, within ECD_00917 at 971.236 kb on - strand, within ECD_00917 at 971.236 kb on - strand, within ECD_00917 at 971.408 kb on - strand, within ECD_00917
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnD remove 968,802 + +0.1 968,863 + -0.5 969,143 + ECD_00916 0.79 +0.3 969,433 - -1.5 969,433 - -0.3 969,433 - +0.2 969,439 - -0.1 969,533 - -0.1 969,592 - -0.7 969,727 - ECD_00917 0.14 -0.2 970,259 - ECD_00917 0.37 +0.0 970,297 - ECD_00917 0.39 +0.7 970,546 - ECD_00917 0.50 -0.4 970,591 + ECD_00917 0.52 +0.3 970,592 - ECD_00917 0.52 -0.6 970,592 - ECD_00917 0.52 +0.4 970,609 + ECD_00917 0.53 +0.6 970,681 - ECD_00917 0.56 -0.3 970,806 + ECD_00917 0.62 +0.2 970,914 - ECD_00917 0.66 -0.3 971,048 - ECD_00917 0.72 -0.7 971,048 - ECD_00917 0.72 +0.3 971,122 + ECD_00917 0.76 -0.9 971,123 - ECD_00917 0.76 -1.5 971,123 - ECD_00917 0.76 +1.2 971,124 + ECD_00917 0.76 -1.6 971,124 + ECD_00917 0.76 -1.4 971,124 + ECD_00917 0.76 -1.8 971,125 - ECD_00917 0.76 -0.1 971,236 - ECD_00917 0.81 -0.9 971,236 - ECD_00917 0.81 -0.1 971,408 - ECD_00917 0.88 -1.2
Or see this region's nucleotide sequence