Experiment: Control_TnD
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00857 and ECD_00858 are separated by 87 nucleotides ECD_00858 and ECD_00859 are separated by 350 nucleotides ECD_00859 and ECD_00860 are separated by 94 nucleotides
ECD_00857: ECD_00857 - ribosomal protein S6 modification protein, at 896,671 to 897,573
_00857
ECD_00858: ECD_00858 - negative regulator of motility; multicopy suppressor of coaA(Ts), at 897,661 to 898,137
_00858
ECD_00859: ECD_00859 - putrescine ABC transporter periplasmic binding protein, at 898,488 to 899,600
_00859
ECD_00860: ECD_00860 - putrescine ABC transporter ATPase, at 899,695 to 900,828
_00860
Position (kb) 898
899
900 Strain fitness (log2 ratio) -2
-1
0
1 at 897.540 kb on + strand at 897.550 kb on + strand at 897.660 kb on + strand at 897.997 kb on + strand, within ECD_00858 at 897.998 kb on - strand, within ECD_00858 at 898.062 kb on + strand, within ECD_00858 at 898.123 kb on + strand at 898.352 kb on + strand at 898.590 kb on + strand at 898.885 kb on - strand, within ECD_00859 at 899.173 kb on - strand, within ECD_00859 at 899.323 kb on + strand, within ECD_00859 at 899.379 kb on + strand, within ECD_00859 at 899.380 kb on - strand, within ECD_00859 at 899.821 kb on + strand, within ECD_00860 at 899.821 kb on + strand, within ECD_00860 at 899.821 kb on + strand, within ECD_00860 at 899.821 kb on + strand, within ECD_00860 at 899.821 kb on + strand, within ECD_00860 at 899.821 kb on + strand, within ECD_00860 at 899.822 kb on - strand, within ECD_00860 at 899.822 kb on - strand, within ECD_00860 at 899.884 kb on - strand, within ECD_00860 at 899.992 kb on + strand, within ECD_00860 at 900.057 kb on - strand, within ECD_00860 at 900.203 kb on + strand, within ECD_00860 at 900.204 kb on - strand, within ECD_00860 at 900.407 kb on - strand, within ECD_00860 at 900.420 kb on + strand, within ECD_00860
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnD remove 897,540 + +0.2 897,550 + -0.4 897,660 + -0.9 897,997 + ECD_00858 0.70 -0.4 897,998 - ECD_00858 0.71 -0.4 898,062 + ECD_00858 0.84 -0.6 898,123 + +0.5 898,352 + +0.5 898,590 + -1.8 898,885 - ECD_00859 0.36 -0.7 899,173 - ECD_00859 0.62 +0.5 899,323 + ECD_00859 0.75 +0.2 899,379 + ECD_00859 0.80 -0.1 899,380 - ECD_00859 0.80 +0.0 899,821 + ECD_00860 0.11 +1.5 899,821 + ECD_00860 0.11 +0.4 899,821 + ECD_00860 0.11 -0.8 899,821 + ECD_00860 0.11 +0.5 899,821 + ECD_00860 0.11 +0.7 899,821 + ECD_00860 0.11 -0.5 899,822 - ECD_00860 0.11 +1.6 899,822 - ECD_00860 0.11 +0.1 899,884 - ECD_00860 0.17 -0.6 899,992 + ECD_00860 0.26 -0.7 900,057 - ECD_00860 0.32 -0.1 900,203 + ECD_00860 0.45 -0.9 900,204 - ECD_00860 0.45 +0.1 900,407 - ECD_00860 0.63 -0.3 900,420 + ECD_00860 0.64 +0.3
Or see this region's nucleotide sequence