Experiment: Control_TnD
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00855 and ECD_00856 overlap by 17 nucleotides ECD_00856 and ECD_00857 are separated by 60 nucleotides ECD_00857 and ECD_00858 are separated by 87 nucleotides ECD_00858 and ECD_00859 are separated by 350 nucleotides
ECD_00855: ECD_00855 - DUF1418 family protein, at 895,617 to 895,904
_00855
ECD_00856: ECD_00856 - nitroreductase A, NADPH-dependent, FMN-dependent, at 895,888 to 896,610
_00856
ECD_00857: ECD_00857 - ribosomal protein S6 modification protein, at 896,671 to 897,573
_00857
ECD_00858: ECD_00858 - negative regulator of motility; multicopy suppressor of coaA(Ts), at 897,661 to 898,137
_00858
ECD_00859: ECD_00859 - putrescine ABC transporter periplasmic binding protein, at 898,488 to 899,600
_00859
Position (kb) 896
897
898 Strain fitness (log2 ratio) -1
0
1 at 895.977 kb on + strand, within ECD_00856 at 895.977 kb on + strand, within ECD_00856 at 896.147 kb on + strand, within ECD_00856 at 896.269 kb on + strand, within ECD_00856 at 896.269 kb on + strand, within ECD_00856 at 896.270 kb on - strand, within ECD_00856 at 896.579 kb on - strand at 896.628 kb on - strand at 896.684 kb on + strand at 896.708 kb on - strand at 896.738 kb on + strand at 896.782 kb on + strand, within ECD_00857 at 896.792 kb on + strand, within ECD_00857 at 896.792 kb on + strand, within ECD_00857 at 896.877 kb on + strand, within ECD_00857 at 896.885 kb on - strand, within ECD_00857 at 897.207 kb on + strand, within ECD_00857 at 897.540 kb on + strand at 897.550 kb on + strand at 897.660 kb on + strand at 897.997 kb on + strand, within ECD_00858 at 897.998 kb on - strand, within ECD_00858 at 898.062 kb on + strand, within ECD_00858 at 898.123 kb on + strand at 898.352 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnD remove 895,977 + ECD_00856 0.12 +0.5 895,977 + ECD_00856 0.12 -0.3 896,147 + ECD_00856 0.36 -0.1 896,269 + ECD_00856 0.53 +0.2 896,269 + ECD_00856 0.53 +0.6 896,270 - ECD_00856 0.53 -0.6 896,579 - -0.4 896,628 - +0.2 896,684 + +0.4 896,708 - +0.6 896,738 + +0.6 896,782 + ECD_00857 0.12 +0.5 896,792 + ECD_00857 0.13 -0.0 896,792 + ECD_00857 0.13 -0.8 896,877 + ECD_00857 0.23 -0.6 896,885 - ECD_00857 0.24 -0.4 897,207 + ECD_00857 0.59 -0.2 897,540 + +0.2 897,550 + -0.4 897,660 + -0.9 897,997 + ECD_00858 0.70 -0.4 897,998 - ECD_00858 0.71 -0.4 898,062 + ECD_00858 0.84 -0.6 898,123 + +0.5 898,352 + +0.5
Or see this region's nucleotide sequence