Strain Fitness in Escherichia coli BL21 around ECD_00845

Experiment: Control_TnD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00843 and ECD_00844 overlap by 8 nucleotidesECD_00844 and ECD_00845 overlap by 4 nucleotidesECD_00845 and ECD_00846 are separated by 1 nucleotidesECD_00846 and ECD_00847 overlap by 29 nucleotides ECD_00843: ECD_00843 - phage baseplate assembly protein, at 886,945 to 887,853 _00843 ECD_00844: ECD_00844 - putative phage tail protein, at 887,846 to 888,451 _00844 ECD_00845: ECD_00845 - hypothetical protein, at 888,448 to 890,070 _00845 ECD_00846: ECD_00846 - hypothetical protein, at 890,072 to 890,509 _00846 ECD_00847: ECD_00847 - e14 prophage; putative tail fiber assembly protein, at 890,481 to 891,083 _00847 Position (kb) 888 889 890 891Strain fitness (log2 ratio) -2 -1 0 1at 887.814 kb on + strandat 888.065 kb on + strand, within ECD_00844at 888.220 kb on + strand, within ECD_00844at 888.220 kb on + strand, within ECD_00844at 888.225 kb on - strand, within ECD_00844at 888.225 kb on - strand, within ECD_00844at 888.336 kb on - strand, within ECD_00844at 888.336 kb on - strand, within ECD_00844at 888.359 kb on + strand, within ECD_00844at 888.365 kb on + strand, within ECD_00844at 888.637 kb on + strand, within ECD_00845at 888.775 kb on + strand, within ECD_00845at 888.777 kb on + strand, within ECD_00845at 888.852 kb on + strand, within ECD_00845at 888.898 kb on + strand, within ECD_00845at 888.898 kb on + strand, within ECD_00845at 888.898 kb on + strand, within ECD_00845at 888.942 kb on + strand, within ECD_00845at 888.985 kb on + strand, within ECD_00845at 888.985 kb on + strand, within ECD_00845at 888.985 kb on + strand, within ECD_00845at 889.105 kb on - strand, within ECD_00845at 889.455 kb on + strand, within ECD_00845at 889.514 kb on + strand, within ECD_00845at 889.514 kb on + strand, within ECD_00845at 889.515 kb on - strand, within ECD_00845at 889.515 kb on - strand, within ECD_00845at 889.551 kb on + strand, within ECD_00845at 889.570 kb on + strand, within ECD_00845at 889.570 kb on + strand, within ECD_00845at 889.593 kb on + strand, within ECD_00845at 889.593 kb on + strand, within ECD_00845at 889.598 kb on + strand, within ECD_00845at 889.687 kb on + strand, within ECD_00845at 889.860 kb on + strand, within ECD_00845at 889.894 kb on + strand, within ECD_00845at 889.894 kb on + strand, within ECD_00845at 889.935 kb on - strandat 889.971 kb on + strandat 889.971 kb on + strandat 889.972 kb on - strandat 890.081 kb on + strandat 890.225 kb on - strand, within ECD_00846at 890.225 kb on - strand, within ECD_00846at 890.319 kb on + strand, within ECD_00846at 890.320 kb on - strand, within ECD_00846at 890.339 kb on + strand, within ECD_00846at 890.471 kb on - strandat 890.554 kb on + strand, within ECD_00847at 890.571 kb on - strand, within ECD_00847at 890.633 kb on + strand, within ECD_00847at 890.715 kb on - strand, within ECD_00847at 890.715 kb on - strand, within ECD_00847at 890.715 kb on - strand, within ECD_00847at 890.835 kb on - strand, within ECD_00847at 891.021 kb on - strand, within ECD_00847

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnD
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887,814 + +1.1
888,065 + ECD_00844 0.36 -0.4
888,220 + ECD_00844 0.62 -0.2
888,220 + ECD_00844 0.62 +0.1
888,225 - ECD_00844 0.63 -0.2
888,225 - ECD_00844 0.63 +0.1
888,336 - ECD_00844 0.81 +0.7
888,336 - ECD_00844 0.81 +0.5
888,359 + ECD_00844 0.85 -2.1
888,365 + ECD_00844 0.86 +1.1
888,637 + ECD_00845 0.12 +0.5
888,775 + ECD_00845 0.20 -0.3
888,777 + ECD_00845 0.20 +0.2
888,852 + ECD_00845 0.25 +0.6
888,898 + ECD_00845 0.28 +0.1
888,898 + ECD_00845 0.28 +0.0
888,898 + ECD_00845 0.28 +0.6
888,942 + ECD_00845 0.30 -2.1
888,985 + ECD_00845 0.33 -1.6
888,985 + ECD_00845 0.33 -0.6
888,985 + ECD_00845 0.33 +0.5
889,105 - ECD_00845 0.40 +0.6
889,455 + ECD_00845 0.62 -0.7
889,514 + ECD_00845 0.66 +0.2
889,514 + ECD_00845 0.66 +0.3
889,515 - ECD_00845 0.66 -0.0
889,515 - ECD_00845 0.66 -0.0
889,551 + ECD_00845 0.68 -0.6
889,570 + ECD_00845 0.69 -1.9
889,570 + ECD_00845 0.69 -1.0
889,593 + ECD_00845 0.71 -0.1
889,593 + ECD_00845 0.71 +0.1
889,598 + ECD_00845 0.71 -0.3
889,687 + ECD_00845 0.76 +0.5
889,860 + ECD_00845 0.87 -0.2
889,894 + ECD_00845 0.89 +0.5
889,894 + ECD_00845 0.89 -0.6
889,935 - -0.9
889,971 + -1.8
889,971 + +0.3
889,972 - -0.5
890,081 + +0.2
890,225 - ECD_00846 0.35 -1.0
890,225 - ECD_00846 0.35 +0.5
890,319 + ECD_00846 0.56 +0.6
890,320 - ECD_00846 0.57 -1.0
890,339 + ECD_00846 0.61 +0.5
890,471 - +0.5
890,554 + ECD_00847 0.12 +0.2
890,571 - ECD_00847 0.15 +0.6
890,633 + ECD_00847 0.25 +0.5
890,715 - ECD_00847 0.39 +1.4
890,715 - ECD_00847 0.39 -0.0
890,715 - ECD_00847 0.39 +1.2
890,835 - ECD_00847 0.59 +0.1
891,021 - ECD_00847 0.90 -0.3

Or see this region's nucleotide sequence