Experiment: Control_TnD
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00310 and ECD_00311 are separated by 34 nucleotides ECD_00311 and ECD_00312 are separated by 185 nucleotides ECD_00312 and ECD_00313 are separated by 81 nucleotides ECD_00313 and ECD_00314 overlap by 82 nucleotides ECD_00314 and ECD_00315 are separated by 163 nucleotides
ECD_00310: ECD_00310 - alcohol dehydrogenase class III; glutathione-dependent formaldehyde dehydrogenase, at 347,798 to 348,907
_00310
ECD_00311: ECD_00311 - regulator protein that represses frmRAB operon, at 348,942 to 349,217
_00311
ECD_00312: ECD_00312 - outer membrane protein, at 349,403 to 350,176
_00312
ECD_00313: ECD_00313 - IS1 protein InsB, at 350,258 to 350,761
_00313
ECD_00314: ECD_00314 - IS1 protein InsA, at 350,680 to 350,955
_00314
ECD_00315: ECD_00315 - taurine ABC transporter periplasmic binding protein, at 351,119 to 352,081
_00315
Position (kb) 349
350
351 Strain fitness (log2 ratio) -1
0
1 at 348.477 kb on + strand, within ECD_00310 at 348.478 kb on - strand, within ECD_00310 at 348.505 kb on - strand, within ECD_00310 at 348.510 kb on + strand, within ECD_00310 at 348.645 kb on + strand, within ECD_00310 at 348.773 kb on - strand, within ECD_00310 at 348.773 kb on - strand, within ECD_00310 at 348.811 kb on + strand at 349.007 kb on - strand, within ECD_00311 at 349.105 kb on - strand, within ECD_00311 at 349.246 kb on - strand at 349.288 kb on - strand at 349.291 kb on - strand at 349.445 kb on - strand at 349.445 kb on - strand at 349.498 kb on + strand, within ECD_00312 at 349.499 kb on - strand, within ECD_00312 at 349.610 kb on + strand, within ECD_00312 at 349.611 kb on - strand, within ECD_00312 at 349.618 kb on + strand, within ECD_00312 at 349.666 kb on + strand, within ECD_00312 at 349.667 kb on - strand, within ECD_00312 at 349.668 kb on + strand, within ECD_00312 at 349.669 kb on - strand, within ECD_00312 at 349.672 kb on + strand, within ECD_00312 at 349.673 kb on - strand, within ECD_00312 at 349.705 kb on - strand, within ECD_00312 at 349.732 kb on + strand, within ECD_00312 at 349.735 kb on - strand, within ECD_00312 at 349.735 kb on - strand, within ECD_00312 at 349.742 kb on + strand, within ECD_00312 at 349.779 kb on + strand, within ECD_00312 at 349.783 kb on - strand, within ECD_00312 at 349.841 kb on - strand, within ECD_00312 at 349.877 kb on - strand, within ECD_00312 at 349.928 kb on - strand, within ECD_00312 at 350.046 kb on + strand, within ECD_00312 at 350.046 kb on + strand, within ECD_00312 at 350.047 kb on - strand, within ECD_00312 at 350.234 kb on + strand at 351.073 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnD remove 348,477 + ECD_00310 0.61 +0.1 348,478 - ECD_00310 0.61 -0.1 348,505 - ECD_00310 0.64 -0.5 348,510 + ECD_00310 0.64 +0.1 348,645 + ECD_00310 0.76 -0.1 348,773 - ECD_00310 0.88 -0.0 348,773 - ECD_00310 0.88 -0.5 348,811 + +0.2 349,007 - ECD_00311 0.24 +0.3 349,105 - ECD_00311 0.59 +0.0 349,246 - +0.9 349,288 - +0.6 349,291 - -0.1 349,445 - +0.5 349,445 - +0.9 349,498 + ECD_00312 0.12 +0.1 349,499 - ECD_00312 0.12 +0.7 349,610 + ECD_00312 0.27 +0.4 349,611 - ECD_00312 0.27 +0.9 349,618 + ECD_00312 0.28 -0.2 349,666 + ECD_00312 0.34 +0.4 349,667 - ECD_00312 0.34 +0.2 349,668 + ECD_00312 0.34 +0.4 349,669 - ECD_00312 0.34 +0.1 349,672 + ECD_00312 0.35 -0.6 349,673 - ECD_00312 0.35 +0.5 349,705 - ECD_00312 0.39 -0.1 349,732 + ECD_00312 0.43 -0.2 349,735 - ECD_00312 0.43 +0.3 349,735 - ECD_00312 0.43 +0.5 349,742 + ECD_00312 0.44 +0.5 349,779 + ECD_00312 0.49 +1.2 349,783 - ECD_00312 0.49 -0.7 349,841 - ECD_00312 0.57 +0.4 349,877 - ECD_00312 0.61 +0.1 349,928 - ECD_00312 0.68 +0.9 350,046 + ECD_00312 0.83 +0.3 350,046 + ECD_00312 0.83 +0.2 350,047 - ECD_00312 0.83 -0.2 350,234 + +0.4 351,073 + -0.6
Or see this region's nucleotide sequence