Experiment: Control_TnD
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00281 and ECD_00282 are separated by 412 nucleotides ECD_00282 and ECD_00283 are separated by 16 nucleotides ECD_00283 and ECD_00284 are separated by 146 nucleotides ECD_00284 and ECD_00285 are separated by 97 nucleotides
ECD_00281: ECD_00281 - uncharacterized protein, at 313,805 to 314,620
_00281
ECD_00282: ECD_00282 - uncharacterized protein, at 315,033 to 315,278
_00282
ECD_00283: ECD_00283 - amino acid exporter for proline, lysine, glutamate, homoserine, at 315,295 to 315,966
_00283
ECD_00284: ECD_00284 - periplasmic protein, function unknown, YhcN family, at 316,113 to 316,388
_00284
ECD_00285: ECD_00285 - propionate catabolism operon regulatory protein, at 316,486 to 318,072
_00285
Position (kb) 315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 314.348 kb on - strand, within ECD_00281 at 314.383 kb on + strand, within ECD_00281 at 314.513 kb on + strand, within ECD_00281 at 314.738 kb on + strand at 314.904 kb on + strand at 314.971 kb on - strand at 315.009 kb on + strand at 315.079 kb on + strand, within ECD_00282 at 315.080 kb on - strand, within ECD_00282 at 315.182 kb on + strand, within ECD_00282 at 315.183 kb on - strand, within ECD_00282 at 315.194 kb on + strand, within ECD_00282 at 315.194 kb on + strand, within ECD_00282 at 315.200 kb on + strand, within ECD_00282 at 315.209 kb on + strand, within ECD_00282 at 315.224 kb on - strand, within ECD_00282 at 315.276 kb on + strand at 315.276 kb on + strand at 315.276 kb on + strand at 315.277 kb on - strand at 315.277 kb on - strand at 315.317 kb on + strand at 315.345 kb on + strand at 315.346 kb on - strand at 315.478 kb on + strand, within ECD_00283 at 315.508 kb on + strand, within ECD_00283 at 315.619 kb on + strand, within ECD_00283 at 315.619 kb on + strand, within ECD_00283 at 315.842 kb on - strand, within ECD_00283 at 315.842 kb on - strand, within ECD_00283 at 316.033 kb on + strand at 316.056 kb on + strand at 316.376 kb on + strand at 316.404 kb on - strand at 316.713 kb on + strand, within ECD_00285 at 316.789 kb on + strand, within ECD_00285 at 316.916 kb on + strand, within ECD_00285 at 316.917 kb on - strand, within ECD_00285
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnD remove 314,348 - ECD_00281 0.67 +0.1 314,383 + ECD_00281 0.71 +0.4 314,513 + ECD_00281 0.87 +0.1 314,738 + +0.6 314,904 + +0.5 314,971 - -2.3 315,009 + +0.1 315,079 + ECD_00282 0.19 +0.4 315,080 - ECD_00282 0.19 +0.4 315,182 + ECD_00282 0.61 +0.3 315,183 - ECD_00282 0.61 -1.0 315,194 + ECD_00282 0.65 -0.4 315,194 + ECD_00282 0.65 -0.3 315,200 + ECD_00282 0.68 -1.6 315,209 + ECD_00282 0.72 +0.5 315,224 - ECD_00282 0.78 +0.5 315,276 + +0.4 315,276 + +0.9 315,276 + +0.1 315,277 - -2.9 315,277 - +0.2 315,317 + +0.4 315,345 + +0.6 315,346 - -0.7 315,478 + ECD_00283 0.27 +1.7 315,508 + ECD_00283 0.32 +0.4 315,619 + ECD_00283 0.48 +0.1 315,619 + ECD_00283 0.48 +0.5 315,842 - ECD_00283 0.81 -0.8 315,842 - ECD_00283 0.81 -0.3 316,033 + +0.3 316,056 + +1.1 316,376 + +0.3 316,404 - +0.4 316,713 + ECD_00285 0.14 +0.2 316,789 + ECD_00285 0.19 -0.1 316,916 + ECD_00285 0.27 -0.3 316,917 - ECD_00285 0.27 +0.7
Or see this region's nucleotide sequence