Experiment: Control_TnD
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00226 and ECD_00227 are separated by 51 nucleotides ECD_00227 and ECD_00228 are separated by 2 nucleotides ECD_00228 and ECD_00229 are separated by 9 nucleotides
ECD_00226: ECD_00226 - DNA polymerase IV, at 255,464 to 256,519
_00226
ECD_00227: ECD_00227 - antitoxin of the YafO-YafN toxin-antitoxin system, at 256,571 to 256,864
_00227
ECD_00228: ECD_00228 - mRNA interferase toxin of the YafO-YafN toxin-antitoxin system, at 256,867 to 257,265
_00228
ECD_00229: ECD_00229 - GNAT family putative N-acetyltransferase, at 257,275 to 257,727
_00229
Position (kb) 255
256
257 Strain fitness (log2 ratio) -2
-1
0
1 at 254.477 kb on + strand at 254.591 kb on + strand at 254.592 kb on - strand at 254.722 kb on - strand at 254.964 kb on + strand at 254.964 kb on + strand at 254.965 kb on - strand at 254.965 kb on - strand at 254.992 kb on - strand at 255.004 kb on - strand at 255.057 kb on + strand at 255.058 kb on - strand at 255.088 kb on + strand at 255.100 kb on - strand at 255.100 kb on - strand at 255.103 kb on + strand at 255.268 kb on - strand at 255.301 kb on + strand at 255.307 kb on + strand at 255.308 kb on - strand at 255.327 kb on + strand at 255.437 kb on + strand at 255.554 kb on - strand at 255.554 kb on - strand at 255.599 kb on + strand, within ECD_00226 at 255.622 kb on - strand, within ECD_00226 at 255.625 kb on + strand, within ECD_00226 at 255.699 kb on - strand, within ECD_00226 at 255.780 kb on - strand, within ECD_00226 at 255.990 kb on + strand, within ECD_00226 at 256.071 kb on + strand, within ECD_00226 at 256.138 kb on + strand, within ECD_00226 at 256.306 kb on - strand, within ECD_00226 at 256.530 kb on + strand at 256.976 kb on + strand, within ECD_00228 at 256.977 kb on - strand, within ECD_00228 at 256.977 kb on - strand, within ECD_00228 at 257.127 kb on - strand, within ECD_00228 at 257.129 kb on - strand, within ECD_00228 at 257.516 kb on + strand, within ECD_00229
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnD remove 254,477 + -0.0 254,591 + -2.4 254,592 - +0.3 254,722 - +0.7 254,964 + -0.8 254,964 + -0.4 254,965 - +0.3 254,965 - -0.9 254,992 - +0.5 255,004 - -0.5 255,057 + -0.2 255,058 - +0.4 255,088 + +0.4 255,100 - +0.4 255,100 - -0.0 255,103 + +0.2 255,268 - +0.5 255,301 + -0.3 255,307 + +0.9 255,308 - +1.7 255,327 + +0.0 255,437 + +0.4 255,554 - +1.2 255,554 - -0.2 255,599 + ECD_00226 0.13 -0.8 255,622 - ECD_00226 0.15 -0.2 255,625 + ECD_00226 0.15 -1.0 255,699 - ECD_00226 0.22 +0.0 255,780 - ECD_00226 0.30 -0.9 255,990 + ECD_00226 0.50 -0.4 256,071 + ECD_00226 0.57 +0.5 256,138 + ECD_00226 0.64 +0.1 256,306 - ECD_00226 0.80 +0.1 256,530 + +1.0 256,976 + ECD_00228 0.27 +0.6 256,977 - ECD_00228 0.28 +0.5 256,977 - ECD_00228 0.28 -1.7 257,127 - ECD_00228 0.65 -0.2 257,129 - ECD_00228 0.66 +0.1 257,516 + ECD_00229 0.53 -0.5
Or see this region's nucleotide sequence