Experiment: Control_TnD
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00115 and ECD_00116 are separated by 70 nucleotides ECD_00116 and ECD_00117 are separated by 354 nucleotides
ECD_00115: ECD_00115 - dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase, at 130,717 to 132,141
_00115
ECD_00116: ECD_00116 - DUF3300 family protein, at 132,212 to 134,065
_00116
ECD_00117: ECD_00117 - aconitate hydratase 2; aconitase B; 2-methyl-cis-aconitate hydratase, at 134,420 to 137,017
_00117
Position (kb) 132
133
134
135 Strain fitness (log2 ratio) -2
-1
0
1 at 132.140 kb on - strand at 132.170 kb on + strand at 132.170 kb on + strand at 132.293 kb on - strand at 132.298 kb on + strand at 132.739 kb on - strand, within ECD_00116 at 132.748 kb on - strand, within ECD_00116 at 132.763 kb on + strand, within ECD_00116 at 132.951 kb on + strand, within ECD_00116 at 132.970 kb on - strand, within ECD_00116 at 132.970 kb on - strand, within ECD_00116 at 132.995 kb on - strand, within ECD_00116 at 133.006 kb on + strand, within ECD_00116 at 133.006 kb on + strand, within ECD_00116 at 133.113 kb on + strand, within ECD_00116 at 133.113 kb on + strand, within ECD_00116 at 133.114 kb on - strand, within ECD_00116 at 133.175 kb on + strand, within ECD_00116 at 133.175 kb on + strand, within ECD_00116 at 133.183 kb on - strand, within ECD_00116 at 133.204 kb on + strand, within ECD_00116 at 133.205 kb on - strand, within ECD_00116 at 133.205 kb on - strand, within ECD_00116 at 133.264 kb on - strand, within ECD_00116 at 133.318 kb on - strand, within ECD_00116 at 133.329 kb on + strand, within ECD_00116 at 133.329 kb on + strand, within ECD_00116 at 133.412 kb on - strand, within ECD_00116 at 133.474 kb on + strand, within ECD_00116 at 133.541 kb on + strand, within ECD_00116 at 133.542 kb on - strand, within ECD_00116 at 133.721 kb on - strand, within ECD_00116 at 133.791 kb on - strand, within ECD_00116 at 133.833 kb on - strand, within ECD_00116 at 133.907 kb on - strand at 133.980 kb on - strand at 133.980 kb on - strand at 133.981 kb on + strand at 133.981 kb on + strand at 133.986 kb on - strand at 134.133 kb on + strand at 134.134 kb on - strand at 134.134 kb on - strand at 134.134 kb on - strand at 134.235 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnD remove 132,140 - -0.4 132,170 + -0.4 132,170 + -0.4 132,293 - -1.2 132,298 + +0.1 132,739 - ECD_00116 0.28 +0.1 132,748 - ECD_00116 0.29 -0.4 132,763 + ECD_00116 0.30 -0.0 132,951 + ECD_00116 0.40 +0.8 132,970 - ECD_00116 0.41 -0.5 132,970 - ECD_00116 0.41 -0.8 132,995 - ECD_00116 0.42 +0.1 133,006 + ECD_00116 0.43 +0.3 133,006 + ECD_00116 0.43 -2.1 133,113 + ECD_00116 0.49 +0.5 133,113 + ECD_00116 0.49 -0.8 133,114 - ECD_00116 0.49 +0.2 133,175 + ECD_00116 0.52 -0.6 133,175 + ECD_00116 0.52 +0.3 133,183 - ECD_00116 0.52 +1.0 133,204 + ECD_00116 0.54 +0.2 133,205 - ECD_00116 0.54 -1.0 133,205 - ECD_00116 0.54 +0.0 133,264 - ECD_00116 0.57 -2.5 133,318 - ECD_00116 0.60 -2.7 133,329 + ECD_00116 0.60 +0.1 133,329 + ECD_00116 0.60 -0.1 133,412 - ECD_00116 0.65 -0.4 133,474 + ECD_00116 0.68 +0.6 133,541 + ECD_00116 0.72 -0.0 133,542 - ECD_00116 0.72 +0.3 133,721 - ECD_00116 0.81 +1.3 133,791 - ECD_00116 0.85 -0.4 133,833 - ECD_00116 0.87 +0.0 133,907 - -0.1 133,980 - +0.9 133,980 - -2.0 133,981 + +1.0 133,981 + -1.0 133,986 - +0.3 134,133 + +0.3 134,134 - +0.5 134,134 - +0.6 134,134 - -1.1 134,235 + +1.0
Or see this region's nucleotide sequence