Experiment: NLDM_defined with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03755 and ABID97_RS03760 overlap by 4 nucleotides ABID97_RS03760 and ABID97_RS03765 overlap by 4 nucleotides ABID97_RS03765 and ABID97_RS03770 are separated by 99 nucleotides
ABID97_RS03755: ABID97_RS03755 - fumarylacetoacetate hydrolase family protein, at 771,285 to 772,055
_RS03755
ABID97_RS03760: ABID97_RS03760 - fumarylacetoacetate hydrolase family protein, at 772,052 to 772,693
_RS03760
ABID97_RS03765: ABID97_RS03765 - homoprotocatechuate degradation operon regulator HpaR, at 772,690 to 773,124
_RS03765
ABID97_RS03770: ABID97_RS03770 - DNA repair protein RadA, at 773,224 to 774,618
_RS03770
Position (kb) 772
773
774 Strain fitness (log2 ratio) -1
0
1 at 771.740 kb on - strand, within ABID97_RS03755 at 771.740 kb on - strand, within ABID97_RS03755 at 771.869 kb on - strand, within ABID97_RS03755 at 771.869 kb on - strand, within ABID97_RS03755 at 772.033 kb on + strand at 772.033 kb on + strand at 772.033 kb on + strand at 772.033 kb on + strand at 772.033 kb on + strand at 772.034 kb on - strand at 772.340 kb on + strand, within ABID97_RS03760 at 772.554 kb on + strand, within ABID97_RS03760 at 772.555 kb on - strand, within ABID97_RS03760 at 772.585 kb on - strand, within ABID97_RS03760 at 772.781 kb on + strand, within ABID97_RS03765 at 772.781 kb on + strand, within ABID97_RS03765 at 772.782 kb on - strand, within ABID97_RS03765 at 773.212 kb on + strand at 773.213 kb on - strand at 773.605 kb on + strand, within ABID97_RS03770 at 773.774 kb on - strand, within ABID97_RS03770 at 773.950 kb on + strand, within ABID97_RS03770 at 773.951 kb on - strand, within ABID97_RS03770 at 773.951 kb on - strand, within ABID97_RS03770
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with Chloride 500 mM remove 771,740 - ABID97_RS03755 0.59 +0.7 771,740 - ABID97_RS03755 0.59 -0.2 771,869 - ABID97_RS03755 0.76 +0.8 771,869 - ABID97_RS03755 0.76 +0.4 772,033 + -0.1 772,033 + -0.4 772,033 + -1.0 772,033 + -0.9 772,033 + -0.2 772,034 - +0.3 772,340 + ABID97_RS03760 0.45 -1.7 772,554 + ABID97_RS03760 0.78 +0.1 772,555 - ABID97_RS03760 0.78 +0.0 772,585 - ABID97_RS03760 0.83 -1.2 772,781 + ABID97_RS03765 0.21 -0.9 772,781 + ABID97_RS03765 0.21 -0.1 772,782 - ABID97_RS03765 0.21 -0.7 773,212 + -0.6 773,213 - -0.2 773,605 + ABID97_RS03770 0.27 -0.2 773,774 - ABID97_RS03770 0.39 -0.0 773,950 + ABID97_RS03770 0.52 +0.5 773,951 - ABID97_RS03770 0.52 +0.4 773,951 - ABID97_RS03770 0.52 -0.4
Or see this region's nucleotide sequence