Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03350

Experiment: NLDM_defined with Chloride 250 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS03345 and ABID97_RS03350 are separated by 8 nucleotidesABID97_RS03350 and ABID97_RS03355 are separated by 125 nucleotidesABID97_RS03355 and ABID97_RS03360 are separated by 10 nucleotides ABID97_RS03345: ABID97_RS03345 - phospholipase D family protein, at 676,436 to 678,019 _RS03345 ABID97_RS03350: ABID97_RS03350 - metallophosphoesterase, at 678,028 to 678,834 _RS03350 ABID97_RS03355: ABID97_RS03355 - hypothetical protein, at 678,960 to 679,133 _RS03355 ABID97_RS03360: ABID97_RS03360 - LysR family transcriptional regulator, at 679,144 to 680,124 _RS03360 Position (kb) 678 679Strain fitness (log2 ratio) -2 -1 0 1 2at 677.039 kb on + strand, within ABID97_RS03345at 677.040 kb on - strand, within ABID97_RS03345at 677.040 kb on - strand, within ABID97_RS03345at 677.385 kb on - strand, within ABID97_RS03345at 677.459 kb on + strand, within ABID97_RS03345at 677.459 kb on + strand, within ABID97_RS03345at 677.459 kb on + strand, within ABID97_RS03345at 677.460 kb on - strand, within ABID97_RS03345at 677.624 kb on + strand, within ABID97_RS03345at 677.625 kb on - strand, within ABID97_RS03345at 677.776 kb on + strand, within ABID97_RS03345at 677.777 kb on - strand, within ABID97_RS03345at 677.823 kb on - strand, within ABID97_RS03345at 677.823 kb on - strand, within ABID97_RS03345at 677.823 kb on - strand, within ABID97_RS03345at 677.910 kb on - strandat 678.017 kb on + strandat 678.128 kb on + strand, within ABID97_RS03350at 678.128 kb on + strand, within ABID97_RS03350at 678.128 kb on + strand, within ABID97_RS03350at 678.129 kb on - strand, within ABID97_RS03350at 678.129 kb on - strand, within ABID97_RS03350at 678.129 kb on - strand, within ABID97_RS03350at 678.231 kb on - strand, within ABID97_RS03350at 678.404 kb on + strand, within ABID97_RS03350at 678.404 kb on + strand, within ABID97_RS03350at 678.404 kb on + strand, within ABID97_RS03350at 678.405 kb on - strand, within ABID97_RS03350at 678.405 kb on - strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.621 kb on - strand, within ABID97_RS03350at 678.621 kb on - strand, within ABID97_RS03350at 678.621 kb on - strand, within ABID97_RS03350at 678.621 kb on - strand, within ABID97_RS03350at 678.621 kb on - strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.642 kb on - strand, within ABID97_RS03350at 678.642 kb on - strand, within ABID97_RS03350at 678.642 kb on - strand, within ABID97_RS03350at 678.642 kb on - strand, within ABID97_RS03350at 678.725 kb on + strand, within ABID97_RS03350at 678.726 kb on - strand, within ABID97_RS03350at 678.726 kb on - strand, within ABID97_RS03350at 678.726 kb on - strand, within ABID97_RS03350at 678.848 kb on + strandat 678.848 kb on + strandat 678.848 kb on + strandat 678.868 kb on + strandat 678.868 kb on + strandat 678.869 kb on - strandat 678.869 kb on - strandat 678.869 kb on - strandat 678.869 kb on - strandat 678.869 kb on - strandat 678.910 kb on + strandat 678.917 kb on - strandat 679.514 kb on + strand, within ABID97_RS03360at 679.515 kb on - strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.586 kb on + strand, within ABID97_RS03360at 679.664 kb on + strand, within ABID97_RS03360at 679.746 kb on + strand, within ABID97_RS03360at 679.747 kb on - strand, within ABID97_RS03360at 679.747 kb on - strand, within ABID97_RS03360

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined with Chloride 250 mM
remove
677,039 + ABID97_RS03345 0.38 -0.3
677,040 - ABID97_RS03345 0.38 +0.9
677,040 - ABID97_RS03345 0.38 +0.3
677,385 - ABID97_RS03345 0.60 +0.2
677,459 + ABID97_RS03345 0.65 +0.6
677,459 + ABID97_RS03345 0.65 -0.7
677,459 + ABID97_RS03345 0.65 -0.1
677,460 - ABID97_RS03345 0.65 +1.2
677,624 + ABID97_RS03345 0.75 -0.2
677,625 - ABID97_RS03345 0.75 -0.0
677,776 + ABID97_RS03345 0.85 -0.4
677,777 - ABID97_RS03345 0.85 -0.4
677,823 - ABID97_RS03345 0.88 -0.3
677,823 - ABID97_RS03345 0.88 +0.2
677,823 - ABID97_RS03345 0.88 +0.1
677,910 - +0.6
678,017 + -0.2
678,128 + ABID97_RS03350 0.12 +0.0
678,128 + ABID97_RS03350 0.12 -0.2
678,128 + ABID97_RS03350 0.12 +0.3
678,129 - ABID97_RS03350 0.13 -0.2
678,129 - ABID97_RS03350 0.13 +1.9
678,129 - ABID97_RS03350 0.13 +0.1
678,231 - ABID97_RS03350 0.25 -0.1
678,404 + ABID97_RS03350 0.47 +0.1
678,404 + ABID97_RS03350 0.47 +0.2
678,404 + ABID97_RS03350 0.47 +0.1
678,405 - ABID97_RS03350 0.47 +0.5
678,405 - ABID97_RS03350 0.47 -0.2
678,620 + ABID97_RS03350 0.73 -0.7
678,620 + ABID97_RS03350 0.73 +0.1
678,620 + ABID97_RS03350 0.73 +0.4
678,620 + ABID97_RS03350 0.73 +0.2
678,620 + ABID97_RS03350 0.73 +0.4
678,620 + ABID97_RS03350 0.73 +0.5
678,621 - ABID97_RS03350 0.73 -0.1
678,621 - ABID97_RS03350 0.73 +0.7
678,621 - ABID97_RS03350 0.73 -0.8
678,621 - ABID97_RS03350 0.73 +0.4
678,621 - ABID97_RS03350 0.73 +0.3
678,641 + ABID97_RS03350 0.76 +0.1
678,641 + ABID97_RS03350 0.76 -0.4
678,641 + ABID97_RS03350 0.76 -0.4
678,641 + ABID97_RS03350 0.76 -0.1
678,641 + ABID97_RS03350 0.76 +0.9
678,641 + ABID97_RS03350 0.76 -0.4
678,641 + ABID97_RS03350 0.76 +0.6
678,641 + ABID97_RS03350 0.76 -1.0
678,641 + ABID97_RS03350 0.76 +0.2
678,642 - ABID97_RS03350 0.76 +0.2
678,642 - ABID97_RS03350 0.76 -0.2
678,642 - ABID97_RS03350 0.76 +0.6
678,642 - ABID97_RS03350 0.76 +0.3
678,725 + ABID97_RS03350 0.86 -0.1
678,726 - ABID97_RS03350 0.86 -1.0
678,726 - ABID97_RS03350 0.86 -0.4
678,726 - ABID97_RS03350 0.86 -0.3
678,848 + +1.3
678,848 + -2.6
678,848 + -0.8
678,868 + +0.0
678,868 + +1.1
678,869 - +0.3
678,869 - -0.9
678,869 - -1.4
678,869 - +1.5
678,869 - -0.6
678,910 + +0.1
678,917 - +0.5
679,514 + ABID97_RS03360 0.38 +0.1
679,515 - ABID97_RS03360 0.38 +0.3
679,574 + ABID97_RS03360 0.44 -0.2
679,574 + ABID97_RS03360 0.44 +1.2
679,574 + ABID97_RS03360 0.44 +0.3
679,574 + ABID97_RS03360 0.44 +0.2
679,574 + ABID97_RS03360 0.44 -0.3
679,574 + ABID97_RS03360 0.44 -0.4
679,574 + ABID97_RS03360 0.44 -0.3
679,574 + ABID97_RS03360 0.44 +1.0
679,574 + ABID97_RS03360 0.44 -0.7
679,575 - ABID97_RS03360 0.44 +0.4
679,575 - ABID97_RS03360 0.44 +0.5
679,575 - ABID97_RS03360 0.44 -0.3
679,575 - ABID97_RS03360 0.44 -0.8
679,575 - ABID97_RS03360 0.44 +0.0
679,575 - ABID97_RS03360 0.44 +0.1
679,575 - ABID97_RS03360 0.44 -1.4
679,575 - ABID97_RS03360 0.44 +0.5
679,575 - ABID97_RS03360 0.44 +0.4
679,586 + ABID97_RS03360 0.45 -0.3
679,664 + ABID97_RS03360 0.53 -1.0
679,746 + ABID97_RS03360 0.61 +0.7
679,747 - ABID97_RS03360 0.61 +0.2
679,747 - ABID97_RS03360 0.61 -0.1

Or see this region's nucleotide sequence