Experiment: NLDM_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25030 and ABID97_RS25035 are separated by 140 nucleotides ABID97_RS25035 and ABID97_RS25040 are separated by 76 nucleotides ABID97_RS25040 and ABID97_RS25045 are separated by 7 nucleotides ABID97_RS25045 and ABID97_RS25050 are separated by 21 nucleotides
ABID97_RS25030: ABID97_RS25030 - hypothetical protein, at 5,181,242 to 5,181,874
_RS25030
ABID97_RS25035: ABID97_RS25035 - TIGR01841 family phasin, at 5,182,015 to 5,182,527
_RS25035
ABID97_RS25040: ABID97_RS25040 - peptide chain release factor 3, at 5,182,604 to 5,184,234
_RS25040
ABID97_RS25045: ABID97_RS25045 - HAD-IIB family hydrolase, at 5,184,242 to 5,185,078
_RS25045
ABID97_RS25050: ABID97_RS25050 - tripartite tricarboxylate transporter substrate binding protein, at 5,185,100 to 5,186,068
_RS25050
Position (kb) 5182
5183
5184
5185 Strain fitness (log2 ratio) -2
-1
0
1 at 5181.692 kb on + strand, within ABID97_RS25030 at 5181.693 kb on - strand, within ABID97_RS25030 at 5181.693 kb on - strand, within ABID97_RS25030 at 5181.872 kb on + strand at 5181.872 kb on + strand at 5181.872 kb on + strand at 5181.873 kb on - strand at 5181.938 kb on - strand at 5182.045 kb on - strand at 5182.249 kb on + strand, within ABID97_RS25035 at 5182.469 kb on + strand, within ABID97_RS25035 at 5182.469 kb on + strand, within ABID97_RS25035 at 5182.526 kb on - strand at 5182.526 kb on - strand at 5182.572 kb on - strand at 5182.892 kb on + strand, within ABID97_RS25040 at 5182.892 kb on + strand, within ABID97_RS25040 at 5182.892 kb on + strand, within ABID97_RS25040 at 5182.892 kb on + strand, within ABID97_RS25040 at 5182.892 kb on + strand, within ABID97_RS25040 at 5182.893 kb on - strand, within ABID97_RS25040 at 5183.589 kb on + strand, within ABID97_RS25040 at 5183.589 kb on + strand, within ABID97_RS25040 at 5183.589 kb on + strand, within ABID97_RS25040 at 5183.986 kb on - strand, within ABID97_RS25040 at 5184.019 kb on + strand, within ABID97_RS25040 at 5184.019 kb on + strand, within ABID97_RS25040 at 5184.020 kb on - strand, within ABID97_RS25040 at 5184.803 kb on + strand, within ABID97_RS25045 at 5184.893 kb on + strand, within ABID97_RS25045 at 5184.894 kb on - strand, within ABID97_RS25045 at 5184.894 kb on - strand, within ABID97_RS25045 at 5185.176 kb on + strand at 5185.176 kb on + strand at 5185.177 kb on - strand at 5185.177 kb on - strand at 5185.177 kb on - strand at 5185.194 kb on + strand at 5185.194 kb on + strand at 5185.194 kb on + strand at 5185.194 kb on + strand at 5185.195 kb on - strand at 5185.195 kb on - strand at 5185.213 kb on - strand, within ABID97_RS25050 at 5185.233 kb on + strand, within ABID97_RS25050 at 5185.233 kb on + strand, within ABID97_RS25050 at 5185.233 kb on + strand, within ABID97_RS25050 at 5185.234 kb on - strand, within ABID97_RS25050
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined remove 5,181,692 + ABID97_RS25030 0.71 +0.1 5,181,693 - ABID97_RS25030 0.71 -0.2 5,181,693 - ABID97_RS25030 0.71 -0.3 5,181,872 + -0.1 5,181,872 + -0.3 5,181,872 + +0.0 5,181,873 - -0.4 5,181,938 - -0.1 5,182,045 - -0.2 5,182,249 + ABID97_RS25035 0.46 +0.0 5,182,469 + ABID97_RS25035 0.88 -0.1 5,182,469 + ABID97_RS25035 0.88 -0.3 5,182,526 - -0.0 5,182,526 - -0.0 5,182,572 - +0.6 5,182,892 + ABID97_RS25040 0.18 -1.6 5,182,892 + ABID97_RS25040 0.18 -1.5 5,182,892 + ABID97_RS25040 0.18 -1.5 5,182,892 + ABID97_RS25040 0.18 -0.5 5,182,892 + ABID97_RS25040 0.18 -1.5 5,182,893 - ABID97_RS25040 0.18 -1.0 5,183,589 + ABID97_RS25040 0.60 -1.2 5,183,589 + ABID97_RS25040 0.60 -1.7 5,183,589 + ABID97_RS25040 0.60 -1.3 5,183,986 - ABID97_RS25040 0.85 -1.7 5,184,019 + ABID97_RS25040 0.87 +1.2 5,184,019 + ABID97_RS25040 0.87 -1.9 5,184,020 - ABID97_RS25040 0.87 -0.8 5,184,803 + ABID97_RS25045 0.67 +0.5 5,184,893 + ABID97_RS25045 0.78 -0.4 5,184,894 - ABID97_RS25045 0.78 -0.3 5,184,894 - ABID97_RS25045 0.78 -0.0 5,185,176 + +0.1 5,185,176 + +0.1 5,185,177 - -0.0 5,185,177 - -0.0 5,185,177 - -0.4 5,185,194 + -1.1 5,185,194 + -0.3 5,185,194 + -0.1 5,185,194 + -0.1 5,185,195 - -0.0 5,185,195 - -0.1 5,185,213 - ABID97_RS25050 0.12 +0.1 5,185,233 + ABID97_RS25050 0.14 -0.1 5,185,233 + ABID97_RS25050 0.14 -0.9 5,185,233 + ABID97_RS25050 0.14 +0.6 5,185,234 - ABID97_RS25050 0.14 +0.8
Or see this region's nucleotide sequence