Experiment: NLDM_defined with MS_media 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01320 and ABID97_RS01325 overlap by 4 nucleotides ABID97_RS01325 and ABID97_RS01330 overlap by 28 nucleotides ABID97_RS01330 and ABID97_RS01335 are separated by 51 nucleotides
ABID97_RS01320: ABID97_RS01320 - ABC transporter ATP-binding protein, at 268,607 to 269,368
_RS01320
ABID97_RS01325: ABID97_RS01325 - branched-chain amino acid ABC transporter permease, at 269,365 to 270,219
_RS01325
ABID97_RS01330: ABID97_RS01330 - branched-chain amino acid ABC transporter permease, at 270,192 to 271,130
_RS01330
ABID97_RS01335: ABID97_RS01335 - flavin-dependent oxidoreductase, at 271,182 to 272,456
_RS01335
Position (kb) 270
271
272 Strain fitness (log2 ratio) -1
0
1
2 at 269.481 kb on - strand, within ABID97_RS01325 at 269.645 kb on + strand, within ABID97_RS01325 at 269.702 kb on + strand, within ABID97_RS01325 at 269.703 kb on - strand, within ABID97_RS01325 at 269.768 kb on + strand, within ABID97_RS01325 at 269.768 kb on + strand, within ABID97_RS01325 at 269.769 kb on - strand, within ABID97_RS01325 at 269.870 kb on - strand, within ABID97_RS01325 at 270.087 kb on - strand, within ABID97_RS01325 at 270.361 kb on + strand, within ABID97_RS01330 at 270.362 kb on - strand, within ABID97_RS01330 at 270.362 kb on - strand, within ABID97_RS01330 at 270.856 kb on + strand, within ABID97_RS01330 at 270.857 kb on - strand, within ABID97_RS01330 at 270.896 kb on - strand, within ABID97_RS01330 at 271.078 kb on + strand at 271.079 kb on - strand at 271.939 kb on + strand, within ABID97_RS01335
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with MS_media 0.5 X remove 269,481 - ABID97_RS01325 0.14 +0.0 269,645 + ABID97_RS01325 0.33 -0.2 269,702 + ABID97_RS01325 0.39 +0.0 269,703 - ABID97_RS01325 0.40 +1.9 269,768 + ABID97_RS01325 0.47 +0.4 269,768 + ABID97_RS01325 0.47 -0.1 269,769 - ABID97_RS01325 0.47 +0.8 269,870 - ABID97_RS01325 0.59 +0.1 270,087 - ABID97_RS01325 0.84 -0.2 270,361 + ABID97_RS01330 0.18 -0.2 270,362 - ABID97_RS01330 0.18 -1.2 270,362 - ABID97_RS01330 0.18 -0.4 270,856 + ABID97_RS01330 0.71 +0.2 270,857 - ABID97_RS01330 0.71 -0.6 270,896 - ABID97_RS01330 0.75 -1.2 271,078 + -0.2 271,079 - +0.1 271,939 + ABID97_RS01335 0.59 -0.7
Or see this region's nucleotide sequence