Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00985

Experiment: NLDM_defined with MS_media 0.5 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00975 and ABID97_RS00980 are separated by 10 nucleotidesABID97_RS00980 and ABID97_RS00985 are separated by 146 nucleotidesABID97_RS00985 and ABID97_RS00990 overlap by 4 nucleotidesABID97_RS00990 and ABID97_RS00995 overlap by 4 nucleotides ABID97_RS00975: ABID97_RS00975 - winged helix DNA-binding domain-containing protein, at 196,823 to 197,926 _RS00975 ABID97_RS00980: ABID97_RS00980 - pseudouridine synthase, at 197,937 to 198,761 _RS00980 ABID97_RS00985: ABID97_RS00985 - glycosyltransferase, at 198,908 to 200,047 _RS00985 ABID97_RS00990: ABID97_RS00990 - hypothetical protein, at 200,044 to 200,538 _RS00990 ABID97_RS00995: ABID97_RS00995 - tyrosine-protein phosphatase, at 200,535 to 201,065 _RS00995 Position (kb) 198 199 200 201Strain fitness (log2 ratio) -2 -1 0 1at 198.284 kb on - strand, within ABID97_RS00980at 198.530 kb on - strand, within ABID97_RS00980at 199.058 kb on + strand, within ABID97_RS00985at 199.058 kb on + strandat 199.059 kb on - strand, within ABID97_RS00985at 199.070 kb on + strand, within ABID97_RS00985at 199.071 kb on - strand, within ABID97_RS00985at 199.071 kb on - strand, within ABID97_RS00985at 199.110 kb on - strand, within ABID97_RS00985at 199.902 kb on - strand, within ABID97_RS00985at 199.922 kb on + strand, within ABID97_RS00985at 199.923 kb on - strand, within ABID97_RS00985at 200.749 kb on + strand, within ABID97_RS00995at 200.749 kb on + strand, within ABID97_RS00995at 200.992 kb on - strand, within ABID97_RS00995

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined with MS_media 0.5 X
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198,284 - ABID97_RS00980 0.42 -0.3
198,530 - ABID97_RS00980 0.72 +0.1
199,058 + ABID97_RS00985 0.13 -0.8
199,058 + +0.2
199,059 - ABID97_RS00985 0.13 -0.3
199,070 + ABID97_RS00985 0.14 +0.8
199,071 - ABID97_RS00985 0.14 +0.0
199,071 - ABID97_RS00985 0.14 -0.6
199,110 - ABID97_RS00985 0.18 -2.6
199,902 - ABID97_RS00985 0.87 -0.7
199,922 + ABID97_RS00985 0.89 -0.2
199,923 - ABID97_RS00985 0.89 -0.5
200,749 + ABID97_RS00995 0.40 -0.2
200,749 + ABID97_RS00995 0.40 -0.6
200,992 - ABID97_RS00995 0.86 -0.1

Or see this region's nucleotide sequence