Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27770

Experiment: NLDM_defined with Sorghum Extract Media 0.5 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27760 and ABID97_RS27765 are separated by 136 nucleotidesABID97_RS27765 and ABID97_RS27770 overlap by 20 nucleotidesABID97_RS27770 and ABID97_RS27775 are separated by 146 nucleotides ABID97_RS27760: ABID97_RS27760 - DUF3237 domain-containing protein, at 471,362 to 471,850 _RS27760 ABID97_RS27765: ABID97_RS27765 - LuxR C-terminal-related transcriptional regulator, at 471,987 to 472,757 _RS27765 ABID97_RS27770: ABID97_RS27770 - glutathione S-transferase family protein, at 472,738 to 473,415 _RS27770 ABID97_RS27775: ABID97_RS27775 - efflux RND transporter permease subunit, at 473,562 to 476,639 _RS27775 Position (kb) 472 473 474Strain fitness (log2 ratio) -2 -1 0 1at 472.282 kb on - strand, within ABID97_RS27765at 472.282 kb on - strand, within ABID97_RS27765at 472.968 kb on - strand, within ABID97_RS27770at 473.142 kb on - strand, within ABID97_RS27770at 473.208 kb on - strand, within ABID97_RS27770at 473.291 kb on + strand, within ABID97_RS27770at 473.677 kb on + strandat 473.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined with Sorghum Extract Media 0.5 X
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472,282 - ABID97_RS27765 0.38 -0.0
472,282 - ABID97_RS27765 0.38 -0.1
472,968 - ABID97_RS27770 0.34 -2.6
473,142 - ABID97_RS27770 0.60 -0.1
473,208 - ABID97_RS27770 0.69 -0.3
473,291 + ABID97_RS27770 0.82 -0.7
473,677 + +0.4
473,678 - +0.2

Or see this region's nucleotide sequence