Experiment: NLDM_defined with Sorghum Extract Media 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03870 and ABID97_RS03875 overlap by 4 nucleotides ABID97_RS03875 and ABID97_RS03880 are separated by 5 nucleotides ABID97_RS03880 and ABID97_RS03885 overlap by 4 nucleotides ABID97_RS03885 and ABID97_RS03890 are separated by 7 nucleotides
ABID97_RS03870: ABID97_RS03870 - ABC transporter permease, at 793,753 to 794,814
_RS03870
ABID97_RS03875: ABID97_RS03875 - ABC transporter permease, at 794,811 to 795,734
_RS03875
ABID97_RS03880: ABID97_RS03880 - formamidase, at 795,740 to 796,744
_RS03880
ABID97_RS03885: ABID97_RS03885 - isochorismatase family cysteine hydrolase, at 796,741 to 797,442
_RS03885
ABID97_RS03890: ABID97_RS03890 - ABC transporter ATP-binding protein, at 797,450 to 799,045
_RS03890
Position (kb) 795
796
797 Strain fitness (log2 ratio) -1
0
1 at 795.142 kb on - strand, within ABID97_RS03875 at 795.450 kb on + strand, within ABID97_RS03875 at 795.643 kb on - strand at 796.115 kb on + strand, within ABID97_RS03880 at 796.116 kb on - strand, within ABID97_RS03880 at 796.119 kb on - strand, within ABID97_RS03880 at 796.119 kb on - strand, within ABID97_RS03880 at 796.265 kb on + strand, within ABID97_RS03880 at 796.265 kb on + strand, within ABID97_RS03880 at 796.266 kb on - strand, within ABID97_RS03880 at 796.266 kb on - strand, within ABID97_RS03880 at 796.556 kb on + strand, within ABID97_RS03880 at 796.557 kb on - strand, within ABID97_RS03880 at 796.566 kb on - strand, within ABID97_RS03880 at 796.614 kb on - strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.620 kb on - strand, within ABID97_RS03880 at 796.721 kb on + strand at 796.781 kb on - strand at 796.792 kb on + strand at 796.889 kb on - strand, within ABID97_RS03885 at 797.185 kb on + strand, within ABID97_RS03885 at 797.185 kb on + strand, within ABID97_RS03885 at 797.186 kb on - strand, within ABID97_RS03885 at 797.186 kb on - strand, within ABID97_RS03885 at 797.516 kb on + strand at 797.516 kb on + strand at 797.516 kb on + strand at 797.517 kb on - strand at 797.517 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with Sorghum Extract Media 0.5 X remove 795,142 - ABID97_RS03875 0.36 -0.1 795,450 + ABID97_RS03875 0.69 +0.9 795,643 - -0.3 796,115 + ABID97_RS03880 0.37 -0.5 796,116 - ABID97_RS03880 0.37 +0.2 796,119 - ABID97_RS03880 0.38 -0.1 796,119 - ABID97_RS03880 0.38 +0.1 796,265 + ABID97_RS03880 0.52 -0.5 796,265 + ABID97_RS03880 0.52 -1.0 796,266 - ABID97_RS03880 0.52 -0.3 796,266 - ABID97_RS03880 0.52 +0.8 796,556 + ABID97_RS03880 0.81 -1.6 796,557 - ABID97_RS03880 0.81 -0.7 796,566 - ABID97_RS03880 0.82 +0.0 796,614 - ABID97_RS03880 0.87 -0.2 796,619 + ABID97_RS03880 0.87 -0.7 796,619 + ABID97_RS03880 0.87 -0.2 796,619 + ABID97_RS03880 0.87 -0.3 796,619 + ABID97_RS03880 0.87 -0.9 796,619 + ABID97_RS03880 0.87 -0.6 796,619 + ABID97_RS03880 0.87 +0.2 796,619 + ABID97_RS03880 0.87 +0.1 796,620 - ABID97_RS03880 0.88 -0.3 796,721 + -0.5 796,781 - -0.4 796,792 + +0.1 796,889 - ABID97_RS03885 0.21 -0.6 797,185 + ABID97_RS03885 0.63 -0.2 797,185 + ABID97_RS03885 0.63 +0.4 797,186 - ABID97_RS03885 0.63 -0.4 797,186 - ABID97_RS03885 0.63 -0.1 797,516 + +0.1 797,516 + +0.2 797,516 + -0.4 797,517 - -0.3 797,517 - -0.6
Or see this region's nucleotide sequence