Experiment: NLDM_defined with Sorghum Extract Media 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22005 and ABID97_RS22010 overlap by 4 nucleotides ABID97_RS22010 and ABID97_RS22015 overlap by 4 nucleotides ABID97_RS22015 and ABID97_RS22020 overlap by 4 nucleotides
ABID97_RS22005: ABID97_RS22005 - acyl-CoA dehydrogenase family protein, at 4,552,282 to 4,553,523
_RS22005
ABID97_RS22010: ABID97_RS22010 - ABC transporter substrate-binding protein, at 4,553,520 to 4,554,500
_RS22010
ABID97_RS22015: ABID97_RS22015 - cysteine dioxygenase, at 4,554,497 to 4,555,114
_RS22015
ABID97_RS22020: ABID97_RS22020 - rhodanese-related sulfurtransferase, at 4,555,111 to 4,556,739
_RS22020
Position (kb) 4554
4555
4556 Strain fitness (log2 ratio) -1
0
1 at 4553.712 kb on + strand, within ABID97_RS22010 at 4553.713 kb on - strand, within ABID97_RS22010 at 4553.970 kb on + strand, within ABID97_RS22010 at 4554.105 kb on + strand, within ABID97_RS22010 at 4554.105 kb on + strand, within ABID97_RS22010 at 4554.289 kb on - strand, within ABID97_RS22010 at 4554.300 kb on + strand, within ABID97_RS22010 at 4554.821 kb on + strand, within ABID97_RS22015 at 4554.972 kb on - strand, within ABID97_RS22015 at 4555.003 kb on + strand, within ABID97_RS22015 at 4555.003 kb on + strand, within ABID97_RS22015 at 4555.003 kb on + strand, within ABID97_RS22015 at 4555.003 kb on + strand, within ABID97_RS22015 at 4555.003 kb on + strand, within ABID97_RS22015 at 4555.004 kb on - strand, within ABID97_RS22015 at 4555.004 kb on - strand, within ABID97_RS22015 at 4555.004 kb on - strand, within ABID97_RS22015 at 4555.008 kb on - strand, within ABID97_RS22015 at 4555.385 kb on - strand, within ABID97_RS22020 at 4555.972 kb on + strand, within ABID97_RS22020 at 4556.002 kb on + strand, within ABID97_RS22020
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with Sorghum Extract Media 0.5 X remove 4,553,712 + ABID97_RS22010 0.20 +0.4 4,553,713 - ABID97_RS22010 0.20 -0.4 4,553,970 + ABID97_RS22010 0.46 +0.1 4,554,105 + ABID97_RS22010 0.60 -0.3 4,554,105 + ABID97_RS22010 0.60 -0.4 4,554,289 - ABID97_RS22010 0.78 +0.7 4,554,300 + ABID97_RS22010 0.80 -0.1 4,554,821 + ABID97_RS22015 0.52 -0.2 4,554,972 - ABID97_RS22015 0.77 -0.3 4,555,003 + ABID97_RS22015 0.82 +0.5 4,555,003 + ABID97_RS22015 0.82 +0.1 4,555,003 + ABID97_RS22015 0.82 -0.2 4,555,003 + ABID97_RS22015 0.82 +0.3 4,555,003 + ABID97_RS22015 0.82 -0.3 4,555,004 - ABID97_RS22015 0.82 +1.3 4,555,004 - ABID97_RS22015 0.82 +0.1 4,555,004 - ABID97_RS22015 0.82 +0.5 4,555,008 - ABID97_RS22015 0.83 +1.3 4,555,385 - ABID97_RS22020 0.17 -0.3 4,555,972 + ABID97_RS22020 0.53 -0.5 4,556,002 + ABID97_RS22020 0.55 +0.0
Or see this region's nucleotide sequence