Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28320

Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28315 and ABID97_RS28320 are separated by 6 nucleotidesABID97_RS28320 and ABID97_RS28325 overlap by 4 nucleotides ABID97_RS28315: ABID97_RS28315 - 2Fe-2S iron-sulfur cluster-binding protein, at 581,995 to 583,212 _RS28315 ABID97_RS28320: ABID97_RS28320 - FAD binding domain-containing protein, at 583,219 to 584,070 _RS28320 ABID97_RS28325: ABID97_RS28325 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 584,067 to 586,448 _RS28325 Position (kb) 583 584 585Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 583.220 kb on + strandat 583.220 kb on + strandat 583.469 kb on + strand, within ABID97_RS28320at 584.049 kb on - strandat 584.378 kb on - strand, within ABID97_RS28325at 584.536 kb on + strand, within ABID97_RS28325at 584.537 kb on - strand, within ABID97_RS28325at 584.547 kb on - strand, within ABID97_RS28325at 584.569 kb on + strand, within ABID97_RS28325at 584.570 kb on - strand, within ABID97_RS28325at 584.819 kb on - strand, within ABID97_RS28325

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X
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583,220 + -1.9
583,220 + -0.7
583,469 + ABID97_RS28320 0.29 -1.0
584,049 - +0.3
584,378 - ABID97_RS28325 0.13 +1.2
584,536 + ABID97_RS28325 0.20 +3.5
584,537 - ABID97_RS28325 0.20 +0.2
584,547 - ABID97_RS28325 0.20 +1.1
584,569 + ABID97_RS28325 0.21 +5.0
584,570 - ABID97_RS28325 0.21 -0.1
584,819 - ABID97_RS28325 0.32 +2.7

Or see this region's nucleotide sequence