Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20860 and ABID97_RS20865 are separated by 224 nucleotides ABID97_RS20865 and ABID97_RS20870 are separated by 41 nucleotides ABID97_RS20870 and ABID97_RS20875 overlap by 4 nucleotides
ABID97_RS20860: ABID97_RS20860 - efflux RND transporter periplasmic adaptor subunit, at 4,314,442 to 4,315,788
_RS20860
ABID97_RS20865: ABID97_RS20865 - DUF6622 family protein, at 4,316,013 to 4,316,534
_RS20865
ABID97_RS20870: ABID97_RS20870 - sterol desaturase family protein, at 4,316,576 to 4,317,529
_RS20870
ABID97_RS20875: ABID97_RS20875 - 2TM domain-containing protein, at 4,317,526 to 4,317,828
_RS20875
Position (kb) 4316
4317 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4315.812 kb on - strand at 4315.812 kb on - strand at 4315.861 kb on + strand at 4316.358 kb on + strand, within ABID97_RS20865 at 4316.358 kb on + strand, within ABID97_RS20865 at 4316.436 kb on + strand, within ABID97_RS20865 at 4316.436 kb on + strand, within ABID97_RS20865 at 4316.436 kb on + strand, within ABID97_RS20865 at 4316.678 kb on + strand, within ABID97_RS20870 at 4316.864 kb on + strand, within ABID97_RS20870 at 4316.865 kb on - strand, within ABID97_RS20870 at 4316.867 kb on + strand, within ABID97_RS20870 at 4316.868 kb on - strand, within ABID97_RS20870 at 4316.868 kb on - strand, within ABID97_RS20870 at 4317.074 kb on + strand, within ABID97_RS20870 at 4317.179 kb on + strand, within ABID97_RS20870 at 4317.180 kb on - strand, within ABID97_RS20870 at 4317.236 kb on + strand, within ABID97_RS20870 at 4317.237 kb on - strand, within ABID97_RS20870 at 4317.237 kb on - strand, within ABID97_RS20870
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 4,315,812 - +0.5 4,315,812 - -0.5 4,315,861 + -0.3 4,316,358 + ABID97_RS20865 0.66 -0.0 4,316,358 + ABID97_RS20865 0.66 +2.8 4,316,436 + ABID97_RS20865 0.81 -0.6 4,316,436 + ABID97_RS20865 0.81 +1.3 4,316,436 + ABID97_RS20865 0.81 +1.0 4,316,678 + ABID97_RS20870 0.11 -0.4 4,316,864 + ABID97_RS20870 0.30 -1.8 4,316,865 - ABID97_RS20870 0.30 -1.2 4,316,867 + ABID97_RS20870 0.31 -2.3 4,316,868 - ABID97_RS20870 0.31 +0.8 4,316,868 - ABID97_RS20870 0.31 -0.8 4,317,074 + ABID97_RS20870 0.52 -0.0 4,317,179 + ABID97_RS20870 0.63 +2.2 4,317,180 - ABID97_RS20870 0.63 -1.2 4,317,236 + ABID97_RS20870 0.69 -0.6 4,317,237 - ABID97_RS20870 0.69 +1.8 4,317,237 - ABID97_RS20870 0.69 +0.0
Or see this region's nucleotide sequence