Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20740

Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20735 and ABID97_RS20740 overlap by 1 nucleotidesABID97_RS20740 and ABID97_RS20745 overlap by 4 nucleotides ABID97_RS20735: ABID97_RS20735 - inositol monophosphatase family protein, at 4,281,964 to 4,283,025 _RS20735 ABID97_RS20740: ABID97_RS20740 - FUSC family membrane protein, at 4,283,025 to 4,285,268 _RS20740 ABID97_RS20745: ABID97_RS20745 - mechanosensitive ion channel domain-containing protein, at 4,285,265 to 4,286,359 _RS20745 Position (kb) 4283 4284 4285 4286Strain fitness (log2 ratio) -2 -1 0 1 2at 4283.499 kb on + strand, within ABID97_RS20740at 4283.499 kb on + strand, within ABID97_RS20740at 4283.500 kb on - strand, within ABID97_RS20740at 4283.500 kb on - strand, within ABID97_RS20740at 4283.500 kb on - strand, within ABID97_RS20740at 4283.500 kb on - strand, within ABID97_RS20740at 4283.500 kb on - strand, within ABID97_RS20740at 4283.574 kb on + strand, within ABID97_RS20740at 4284.276 kb on + strand, within ABID97_RS20740at 4284.277 kb on - strand, within ABID97_RS20740at 4284.316 kb on - strand, within ABID97_RS20740at 4284.517 kb on - strand, within ABID97_RS20740at 4284.657 kb on + strand, within ABID97_RS20740at 4284.657 kb on + strand, within ABID97_RS20740at 4284.657 kb on + strand, within ABID97_RS20740at 4284.658 kb on - strand, within ABID97_RS20740at 4284.658 kb on - strand, within ABID97_RS20740at 4286.040 kb on - strand, within ABID97_RS20745at 4286.040 kb on - strand, within ABID97_RS20745at 4286.040 kb on - strand, within ABID97_RS20745

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X
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4,283,499 + ABID97_RS20740 0.21 -1.8
4,283,499 + ABID97_RS20740 0.21 +0.4
4,283,500 - ABID97_RS20740 0.21 -1.2
4,283,500 - ABID97_RS20740 0.21 -0.7
4,283,500 - ABID97_RS20740 0.21 -0.7
4,283,500 - ABID97_RS20740 0.21 -0.0
4,283,500 - ABID97_RS20740 0.21 -0.5
4,283,574 + ABID97_RS20740 0.24 -0.2
4,284,276 + ABID97_RS20740 0.56 -1.9
4,284,277 - ABID97_RS20740 0.56 -0.4
4,284,316 - ABID97_RS20740 0.58 -1.6
4,284,517 - ABID97_RS20740 0.66 -0.7
4,284,657 + ABID97_RS20740 0.73 -2.3
4,284,657 + ABID97_RS20740 0.73 +1.9
4,284,657 + ABID97_RS20740 0.73 -1.0
4,284,658 - ABID97_RS20740 0.73 -1.9
4,284,658 - ABID97_RS20740 0.73 -0.9
4,286,040 - ABID97_RS20745 0.71 -1.2
4,286,040 - ABID97_RS20745 0.71 -0.5
4,286,040 - ABID97_RS20745 0.71 +0.5

Or see this region's nucleotide sequence