Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17565

Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17555 and ABID97_RS17560 overlap by 4 nucleotidesABID97_RS17560 and ABID97_RS17565 are separated by 10 nucleotidesABID97_RS17565 and ABID97_RS17570 are separated by 42 nucleotidesABID97_RS17570 and ABID97_RS17575 are separated by 22 nucleotidesABID97_RS17575 and ABID97_RS17580 are separated by 105 nucleotides ABID97_RS17555: ABID97_RS17555 - glutamate racemase, at 3,627,124 to 3,627,930 _RS17555 ABID97_RS17560: ABID97_RS17560 - hypothetical protein, at 3,627,927 to 3,628,721 _RS17560 ABID97_RS17565: ABID97_RS17565 - MFS transporter, at 3,628,732 to 3,630,033 _RS17565 ABID97_RS17570: ABID97_RS17570 - DUF6806 family protein, at 3,630,076 to 3,630,708 _RS17570 ABID97_RS17575: ABID97_RS17575 - tRNA-Leu, at 3,630,731 to 3,630,822 _RS17575 ABID97_RS17580: ABID97_RS17580 - tRNA-Cys, at 3,630,928 to 3,631,001 _RS17580 Position (kb) 3628 3629 3630 3631Strain fitness (log2 ratio) -2 -1 0 1 2at 3628.315 kb on - strand, within ABID97_RS17560at 3628.411 kb on - strand, within ABID97_RS17560at 3628.555 kb on - strand, within ABID97_RS17560at 3628.668 kb on + strandat 3628.871 kb on + strand, within ABID97_RS17565at 3628.872 kb on - strand, within ABID97_RS17565at 3628.872 kb on - strand, within ABID97_RS17565at 3629.128 kb on + strand, within ABID97_RS17565at 3629.128 kb on + strand, within ABID97_RS17565at 3629.128 kb on + strand, within ABID97_RS17565at 3629.129 kb on - strand, within ABID97_RS17565at 3629.129 kb on - strand, within ABID97_RS17565at 3629.129 kb on - strand, within ABID97_RS17565at 3629.129 kb on - strand, within ABID97_RS17565at 3629.129 kb on - strand, within ABID97_RS17565at 3629.133 kb on - strand, within ABID97_RS17565at 3629.133 kb on - strand, within ABID97_RS17565at 3629.228 kb on + strand, within ABID97_RS17565at 3629.429 kb on + strand, within ABID97_RS17565at 3629.430 kb on - strand, within ABID97_RS17565at 3629.507 kb on + strand, within ABID97_RS17565at 3629.508 kb on - strand, within ABID97_RS17565at 3629.642 kb on + strand, within ABID97_RS17565at 3629.642 kb on + strand, within ABID97_RS17565at 3629.643 kb on - strand, within ABID97_RS17565at 3629.834 kb on + strand, within ABID97_RS17565at 3629.834 kb on + strand, within ABID97_RS17565at 3629.907 kb on - strandat 3629.907 kb on - strandat 3629.964 kb on - strandat 3630.398 kb on + strand, within ABID97_RS17570at 3630.399 kb on - strand, within ABID97_RS17570at 3630.557 kb on + strand, within ABID97_RS17570at 3630.558 kb on - strand, within ABID97_RS17570at 3630.729 kb on + strandat 3630.729 kb on + strandat 3630.729 kb on + strandat 3630.729 kb on + strandat 3630.729 kb on + strandat 3630.729 kb on + strandat 3630.730 kb on - strandat 3630.730 kb on - strandat 3630.730 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X
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3,628,315 - ABID97_RS17560 0.49 -1.2
3,628,411 - ABID97_RS17560 0.61 +0.2
3,628,555 - ABID97_RS17560 0.79 -0.4
3,628,668 + +0.0
3,628,871 + ABID97_RS17565 0.11 +0.7
3,628,872 - ABID97_RS17565 0.11 +0.7
3,628,872 - ABID97_RS17565 0.11 +0.7
3,629,128 + ABID97_RS17565 0.30 -0.4
3,629,128 + ABID97_RS17565 0.30 +1.4
3,629,128 + ABID97_RS17565 0.30 +1.9
3,629,129 - ABID97_RS17565 0.30 -1.1
3,629,129 - ABID97_RS17565 0.30 +0.2
3,629,129 - ABID97_RS17565 0.30 +0.4
3,629,129 - ABID97_RS17565 0.30 +0.1
3,629,129 - ABID97_RS17565 0.30 -0.8
3,629,133 - ABID97_RS17565 0.31 +1.9
3,629,133 - ABID97_RS17565 0.31 -2.2
3,629,228 + ABID97_RS17565 0.38 +0.4
3,629,429 + ABID97_RS17565 0.54 +1.5
3,629,430 - ABID97_RS17565 0.54 +0.9
3,629,507 + ABID97_RS17565 0.60 -0.0
3,629,508 - ABID97_RS17565 0.60 -0.1
3,629,642 + ABID97_RS17565 0.70 +0.4
3,629,642 + ABID97_RS17565 0.70 +1.7
3,629,643 - ABID97_RS17565 0.70 +0.0
3,629,834 + ABID97_RS17565 0.85 +0.9
3,629,834 + ABID97_RS17565 0.85 +0.4
3,629,907 - -0.3
3,629,907 - -1.4
3,629,964 - +0.1
3,630,398 + ABID97_RS17570 0.51 -0.9
3,630,399 - ABID97_RS17570 0.51 -0.6
3,630,557 + ABID97_RS17570 0.76 +0.7
3,630,558 - ABID97_RS17570 0.76 -1.2
3,630,729 + +1.5
3,630,729 + -1.8
3,630,729 + -0.7
3,630,729 + -0.0
3,630,729 + -0.5
3,630,729 + -0.3
3,630,730 - +1.0
3,630,730 - -0.1
3,630,730 - -0.5

Or see this region's nucleotide sequence