Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16160 and ABID97_RS16165 are separated by 245 nucleotides ABID97_RS16165 and ABID97_RS16170 overlap by 4 nucleotides ABID97_RS16170 and ABID97_RS16175 are separated by 103 nucleotides ABID97_RS16175 and ABID97_RS16180 are separated by 7 nucleotides
ABID97_RS16160: ABID97_RS16160 - fatty acid desaturase, at 3,344,969 to 3,346,153
_RS16160
ABID97_RS16165: ABID97_RS16165 - BON domain-containing protein, at 3,346,399 to 3,346,662
_RS16165
ABID97_RS16170: ABID97_RS16170 - phosphoketolase family protein, at 3,346,659 to 3,349,016
_RS16170
ABID97_RS16175: ABID97_RS16175 - response regulator transcription factor, at 3,349,120 to 3,349,860
_RS16175
ABID97_RS16180: ABID97_RS16180 - PAS domain S-box protein, at 3,349,868 to 3,351,961
_RS16180
Position (kb) 3346
3347
3348
3349
3350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3345.756 kb on + strand, within ABID97_RS16160 at 3345.837 kb on + strand, within ABID97_RS16160 at 3346.313 kb on + strand at 3346.842 kb on + strand at 3346.843 kb on - strand at 3346.843 kb on - strand at 3346.953 kb on + strand, within ABID97_RS16170 at 3346.953 kb on + strand, within ABID97_RS16170 at 3346.954 kb on - strand, within ABID97_RS16170 at 3346.954 kb on - strand, within ABID97_RS16170 at 3346.966 kb on - strand, within ABID97_RS16170 at 3347.095 kb on - strand, within ABID97_RS16170 at 3347.112 kb on + strand, within ABID97_RS16170 at 3347.344 kb on - strand, within ABID97_RS16170 at 3348.207 kb on + strand, within ABID97_RS16170 at 3348.207 kb on + strand, within ABID97_RS16170 at 3348.753 kb on + strand, within ABID97_RS16170 at 3348.754 kb on - strand, within ABID97_RS16170 at 3348.754 kb on - strand, within ABID97_RS16170 at 3348.792 kb on + strand at 3348.893 kb on + strand at 3348.957 kb on + strand at 3348.957 kb on + strand at 3348.957 kb on + strand at 3349.187 kb on - strand at 3349.187 kb on - strand at 3349.420 kb on + strand, within ABID97_RS16175 at 3349.420 kb on + strand, within ABID97_RS16175 at 3349.421 kb on - strand, within ABID97_RS16175 at 3349.828 kb on + strand at 3349.828 kb on + strand at 3349.828 kb on + strand at 3349.828 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 3,345,756 + ABID97_RS16160 0.66 +1.2 3,345,837 + ABID97_RS16160 0.73 -1.2 3,346,313 + +0.4 3,346,842 + -0.4 3,346,843 - -0.0 3,346,843 - -1.4 3,346,953 + ABID97_RS16170 0.12 -1.9 3,346,953 + ABID97_RS16170 0.12 -1.0 3,346,954 - ABID97_RS16170 0.13 +0.1 3,346,954 - ABID97_RS16170 0.13 -0.1 3,346,966 - ABID97_RS16170 0.13 -1.4 3,347,095 - ABID97_RS16170 0.18 -0.8 3,347,112 + ABID97_RS16170 0.19 -1.9 3,347,344 - ABID97_RS16170 0.29 +0.9 3,348,207 + ABID97_RS16170 0.66 -0.3 3,348,207 + ABID97_RS16170 0.66 +0.2 3,348,753 + ABID97_RS16170 0.89 +0.0 3,348,754 - ABID97_RS16170 0.89 -0.3 3,348,754 - ABID97_RS16170 0.89 +0.7 3,348,792 + -3.0 3,348,893 + -0.2 3,348,957 + -0.1 3,348,957 + +0.8 3,348,957 + -0.3 3,349,187 - -1.0 3,349,187 - -0.9 3,349,420 + ABID97_RS16175 0.40 +0.3 3,349,420 + ABID97_RS16175 0.40 -0.5 3,349,421 - ABID97_RS16175 0.41 +0.5 3,349,828 + -1.6 3,349,828 + +1.6 3,349,828 + +0.2 3,349,828 + +2.2
Or see this region's nucleotide sequence