Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11000 and ABID97_RS11005 overlap by 4 nucleotides ABID97_RS11005 and ABID97_RS11010 are separated by 93 nucleotides ABID97_RS11010 and ABID97_RS11015 are separated by 75 nucleotides
ABID97_RS11000: ABID97_RS11000 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 2,277,897 to 2,279,105
_RS11000
ABID97_RS11005: ABID97_RS11005 - acyl carrier protein, at 2,279,102 to 2,279,344
_RS11005
ABID97_RS11010: ABID97_RS11010 - phosphatase PAP2 family protein, at 2,279,438 to 2,280,154
_RS11010
ABID97_RS11015: ABID97_RS11015 - helix-turn-helix transcriptional regulator, at 2,280,230 to 2,281,072
_RS11015
Position (kb)
2279
2280
2281 Strain fitness (log2 ratio)
-1
0
1
2 at 2278.657 kb on + strand, within ABID97_RS11000 at 2278.657 kb on + strand, within ABID97_RS11000 at 2278.658 kb on - strand, within ABID97_RS11000 at 2278.658 kb on - strand, within ABID97_RS11000 at 2278.811 kb on - strand, within ABID97_RS11000 at 2279.301 kb on + strand, within ABID97_RS11005 at 2279.302 kb on - strand, within ABID97_RS11005 at 2279.302 kb on - strand, within ABID97_RS11005 at 2279.302 kb on - strand, within ABID97_RS11005 at 2279.811 kb on + strand, within ABID97_RS11010 at 2279.811 kb on + strand, within ABID97_RS11010 at 2279.811 kb on + strand, within ABID97_RS11010 at 2279.910 kb on + strand, within ABID97_RS11010 at 2279.911 kb on - strand, within ABID97_RS11010 at 2279.911 kb on - strand, within ABID97_RS11010 at 2279.928 kb on + strand, within ABID97_RS11010 at 2279.928 kb on + strand, within ABID97_RS11010 at 2279.943 kb on + strand, within ABID97_RS11010 at 2280.028 kb on - strand, within ABID97_RS11010 at 2280.028 kb on - strand, within ABID97_RS11010 at 2280.503 kb on - strand, within ABID97_RS11015 at 2280.775 kb on - strand, within ABID97_RS11015 at 2280.864 kb on + strand, within ABID97_RS11015 at 2280.864 kb on + strand, within ABID97_RS11015 at 2280.864 kb on + strand, within ABID97_RS11015 at 2280.865 kb on - strand, within ABID97_RS11015 at 2280.865 kb on - strand, within ABID97_RS11015 at 2280.865 kb on - strand, within ABID97_RS11015 at 2280.865 kb on - strand, within ABID97_RS11015 at 2281.125 kb on + strand at 2281.125 kb on + strand at 2281.125 kb on + strand at 2281.126 kb on - strand at 2281.126 kb on - strand at 2281.126 kb on - strand at 2281.126 kb on - strand at 2281.126 kb on - strand at 2281.153 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 2,278,657 + ABID97_RS11000 0.63 -0.0 2,278,657 + ABID97_RS11000 0.63 -0.7 2,278,658 - ABID97_RS11000 0.63 -0.5 2,278,658 - ABID97_RS11000 0.63 +2.6 2,278,811 - ABID97_RS11000 0.76 +0.0 2,279,301 + ABID97_RS11005 0.82 +0.2 2,279,302 - ABID97_RS11005 0.82 +2.5 2,279,302 - ABID97_RS11005 0.82 -0.6 2,279,302 - ABID97_RS11005 0.82 -0.4 2,279,811 + ABID97_RS11010 0.52 +1.7 2,279,811 + ABID97_RS11010 0.52 +2.2 2,279,811 + ABID97_RS11010 0.52 +0.8 2,279,910 + ABID97_RS11010 0.66 +0.2 2,279,911 - ABID97_RS11010 0.66 -0.1 2,279,911 - ABID97_RS11010 0.66 +0.4 2,279,928 + ABID97_RS11010 0.68 +1.1 2,279,928 + ABID97_RS11010 0.68 +2.1 2,279,943 + ABID97_RS11010 0.70 +1.0 2,280,028 - ABID97_RS11010 0.82 +1.1 2,280,028 - ABID97_RS11010 0.82 +1.8 2,280,503 - ABID97_RS11015 0.32 +1.9 2,280,775 - ABID97_RS11015 0.65 +0.1 2,280,864 + ABID97_RS11015 0.75 +1.3 2,280,864 + ABID97_RS11015 0.75 -0.1 2,280,864 + ABID97_RS11015 0.75 -0.6 2,280,865 - ABID97_RS11015 0.75 -0.4 2,280,865 - ABID97_RS11015 0.75 +1.1 2,280,865 - ABID97_RS11015 0.75 -0.1 2,280,865 - ABID97_RS11015 0.75 -0.3 2,281,125 + +0.5 2,281,125 + +0.2 2,281,125 + -0.2 2,281,126 - -0.2 2,281,126 - -1.1 2,281,126 - -0.8 2,281,126 - -0.9 2,281,126 - -0.4 2,281,153 - +1.9
Or see this region's nucleotide sequence