Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09400 and ABID97_RS09405 are separated by 19 nucleotides ABID97_RS09405 and ABID97_RS09410 are separated by 58 nucleotides ABID97_RS09410 and ABID97_RS09415 are separated by 24 nucleotides
ABID97_RS09400: ABID97_RS09400 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 1,975,076 to 1,977,526
_RS09400
ABID97_RS09405: ABID97_RS09405 - xanthine dehydrogenase family protein subunit M, at 1,977,546 to 1,978,337
_RS09405
ABID97_RS09410: ABID97_RS09410 - MoxR family ATPase, at 1,978,396 to 1,979,298
_RS09410
ABID97_RS09415: ABID97_RS09415 - VWA domain-containing protein, at 1,979,323 to 1,980,537
_RS09415
Position (kb) 1977
1978
1979 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1976.919 kb on - strand, within ABID97_RS09400 at 1976.933 kb on + strand, within ABID97_RS09400 at 1976.978 kb on + strand, within ABID97_RS09400 at 1977.014 kb on + strand, within ABID97_RS09400 at 1977.015 kb on - strand, within ABID97_RS09400 at 1977.180 kb on - strand, within ABID97_RS09400 at 1977.180 kb on - strand, within ABID97_RS09400 at 1977.224 kb on + strand, within ABID97_RS09400 at 1977.225 kb on - strand, within ABID97_RS09400 at 1977.549 kb on + strand at 1977.550 kb on - strand at 1977.802 kb on - strand, within ABID97_RS09405 at 1978.447 kb on + strand at 1978.630 kb on + strand, within ABID97_RS09410 at 1978.643 kb on - strand, within ABID97_RS09410 at 1978.714 kb on + strand, within ABID97_RS09410 at 1978.726 kb on + strand, within ABID97_RS09410 at 1978.841 kb on - strand, within ABID97_RS09410 at 1978.853 kb on - strand, within ABID97_RS09410 at 1978.967 kb on - strand, within ABID97_RS09410
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 1,976,919 - ABID97_RS09400 0.75 -0.3 1,976,933 + ABID97_RS09400 0.76 +1.7 1,976,978 + ABID97_RS09400 0.78 +0.3 1,977,014 + ABID97_RS09400 0.79 +0.6 1,977,015 - ABID97_RS09400 0.79 +0.8 1,977,180 - ABID97_RS09400 0.86 -0.4 1,977,180 - ABID97_RS09400 0.86 -0.2 1,977,224 + ABID97_RS09400 0.88 +1.1 1,977,225 - ABID97_RS09400 0.88 -0.6 1,977,549 + +1.0 1,977,550 - +0.0 1,977,802 - ABID97_RS09405 0.32 +1.1 1,978,447 + -0.5 1,978,630 + ABID97_RS09410 0.26 +2.3 1,978,643 - ABID97_RS09410 0.27 +4.3 1,978,714 + ABID97_RS09410 0.35 -0.1 1,978,726 + ABID97_RS09410 0.37 -0.1 1,978,841 - ABID97_RS09410 0.49 -0.3 1,978,853 - ABID97_RS09410 0.51 -1.6 1,978,967 - ABID97_RS09410 0.63 +0.0
Or see this region's nucleotide sequence