Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08030

Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS08020 and ABID97_RS08025 are separated by 85 nucleotidesABID97_RS08025 and ABID97_RS08030 are separated by 82 nucleotidesABID97_RS08030 and ABID97_RS08035 are separated by 28 nucleotidesABID97_RS08035 and ABID97_RS08040 are separated by 209 nucleotides ABID97_RS08020: ABID97_RS08020 - helix-turn-helix domain-containing protein, at 1,685,991 to 1,686,593 _RS08020 ABID97_RS08025: ABID97_RS08025 - nuclear transport factor 2 family protein, at 1,686,679 to 1,687,101 _RS08025 ABID97_RS08030: ABID97_RS08030 - cyanase, at 1,687,184 to 1,687,627 _RS08030 ABID97_RS08035: ABID97_RS08035 - SDR family oxidoreductase, at 1,687,656 to 1,688,408 _RS08035 ABID97_RS08040: ABID97_RS08040 - DUF4329 domain-containing protein, at 1,688,618 to 1,689,136 _RS08040 Position (kb) 1687 1688Strain fitness (log2 ratio) -2 -1 0 1 2at 1686.220 kb on - strand, within ABID97_RS08020at 1686.460 kb on + strand, within ABID97_RS08020at 1686.461 kb on - strand, within ABID97_RS08020at 1686.532 kb on + strand, within ABID97_RS08020at 1686.532 kb on + strand, within ABID97_RS08020at 1686.532 kb on + strand, within ABID97_RS08020at 1686.533 kb on - strandat 1686.605 kb on - strandat 1686.790 kb on + strand, within ABID97_RS08025at 1686.850 kb on + strand, within ABID97_RS08025at 1686.950 kb on - strand, within ABID97_RS08025at 1687.397 kb on + strand, within ABID97_RS08030at 1687.397 kb on + strand, within ABID97_RS08030at 1687.398 kb on - strand, within ABID97_RS08030at 1687.398 kb on - strand, within ABID97_RS08030at 1687.442 kb on + strand, within ABID97_RS08030at 1687.442 kb on + strand, within ABID97_RS08030at 1687.443 kb on - strand, within ABID97_RS08030at 1687.451 kb on + strand, within ABID97_RS08030at 1687.452 kb on - strand, within ABID97_RS08030at 1687.946 kb on - strand, within ABID97_RS08035at 1688.212 kb on + strand, within ABID97_RS08035at 1688.567 kb on + strandat 1688.568 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X
remove
1,686,220 - ABID97_RS08020 0.38 +0.0
1,686,460 + ABID97_RS08020 0.78 -0.8
1,686,461 - ABID97_RS08020 0.78 -0.5
1,686,532 + ABID97_RS08020 0.90 +2.5
1,686,532 + ABID97_RS08020 0.90 +0.0
1,686,532 + ABID97_RS08020 0.90 -0.5
1,686,533 - -0.7
1,686,605 - -0.5
1,686,790 + ABID97_RS08025 0.26 -0.5
1,686,850 + ABID97_RS08025 0.40 +0.0
1,686,950 - ABID97_RS08025 0.64 -0.9
1,687,397 + ABID97_RS08030 0.48 +0.6
1,687,397 + ABID97_RS08030 0.48 +1.2
1,687,398 - ABID97_RS08030 0.48 -2.4
1,687,398 - ABID97_RS08030 0.48 +0.0
1,687,442 + ABID97_RS08030 0.58 -0.7
1,687,442 + ABID97_RS08030 0.58 +0.6
1,687,443 - ABID97_RS08030 0.58 +0.5
1,687,451 + ABID97_RS08030 0.60 -1.3
1,687,452 - ABID97_RS08030 0.60 +0.2
1,687,946 - ABID97_RS08035 0.39 -1.2
1,688,212 + ABID97_RS08035 0.74 -1.0
1,688,567 + +0.6
1,688,568 - -1.6

Or see this region's nucleotide sequence