Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07290 and ABID97_RS07295 are separated by 7 nucleotides ABID97_RS07295 and ABID97_RS07300 overlap by 4 nucleotides ABID97_RS07300 and ABID97_RS07305 are separated by 72 nucleotides
ABID97_RS07290: ABID97_RS07290 - aspartate--tRNA ligase, at 1,546,130 to 1,547,935
_RS07290
ABID97_RS07295: ABID97_RS07295 - dihydroneopterin triphosphate diphosphatase, at 1,547,943 to 1,548,416
_RS07295
ABID97_RS07300: ABID97_RS07300 - endonuclease/exonuclease/phosphatase family protein, at 1,548,413 to 1,549,168
_RS07300
ABID97_RS07305: ABID97_RS07305 - GTP cyclohydrolase I, at 1,549,241 to 1,549,972
_RS07305
Position (kb)
1547
1548
1549 Strain fitness (log2 ratio)
-2
-1
0
1 at 1548.198 kb on + strand, within ABID97_RS07295 at 1548.199 kb on - strand, within ABID97_RS07295 at 1548.205 kb on + strand, within ABID97_RS07295 at 1548.205 kb on + strand, within ABID97_RS07295 at 1548.205 kb on + strand, within ABID97_RS07295 at 1548.205 kb on + strand, within ABID97_RS07295 at 1548.205 kb on + strand, within ABID97_RS07295 at 1548.206 kb on - strand, within ABID97_RS07295 at 1548.206 kb on - strand, within ABID97_RS07295 at 1548.206 kb on - strand, within ABID97_RS07295 at 1548.206 kb on - strand, within ABID97_RS07295 at 1548.206 kb on - strand, within ABID97_RS07295 at 1548.206 kb on - strand, within ABID97_RS07295 at 1548.208 kb on - strand, within ABID97_RS07295 at 1548.229 kb on - strand, within ABID97_RS07295 at 1548.229 kb on - strand, within ABID97_RS07295 at 1548.449 kb on + strand at 1548.450 kb on - strand at 1548.450 kb on - strand at 1548.644 kb on + strand at 1548.644 kb on + strand, within ABID97_RS07300 at 1548.645 kb on - strand, within ABID97_RS07300 at 1548.645 kb on - strand, within ABID97_RS07300 at 1548.657 kb on - strand, within ABID97_RS07300 at 1548.657 kb on - strand, within ABID97_RS07300 at 1549.022 kb on + strand, within ABID97_RS07300 at 1549.023 kb on - strand, within ABID97_RS07300 at 1549.229 kb on + strand at 1549.229 kb on + strand at 1549.229 kb on + strand at 1549.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 1,548,198 + ABID97_RS07295 0.54 -0.2 1,548,199 - ABID97_RS07295 0.54 -0.1 1,548,205 + ABID97_RS07295 0.55 +0.0 1,548,205 + ABID97_RS07295 0.55 +0.1 1,548,205 + ABID97_RS07295 0.55 +0.5 1,548,205 + ABID97_RS07295 0.55 +0.6 1,548,205 + ABID97_RS07295 0.55 +1.4 1,548,206 - ABID97_RS07295 0.55 -2.2 1,548,206 - ABID97_RS07295 0.55 +0.1 1,548,206 - ABID97_RS07295 0.55 +1.6 1,548,206 - ABID97_RS07295 0.55 -1.2 1,548,206 - ABID97_RS07295 0.55 +1.1 1,548,206 - ABID97_RS07295 0.55 -0.5 1,548,208 - ABID97_RS07295 0.56 -0.8 1,548,229 - ABID97_RS07295 0.60 +0.5 1,548,229 - ABID97_RS07295 0.60 +0.0 1,548,449 + +0.1 1,548,450 - -0.9 1,548,450 - -1.1 1,548,644 + +1.4 1,548,644 + ABID97_RS07300 0.31 -1.3 1,548,645 - ABID97_RS07300 0.31 -1.4 1,548,645 - ABID97_RS07300 0.31 -1.3 1,548,657 - ABID97_RS07300 0.32 +0.3 1,548,657 - ABID97_RS07300 0.32 -1.6 1,549,022 + ABID97_RS07300 0.81 -0.1 1,549,023 - ABID97_RS07300 0.81 +1.2 1,549,229 + -1.3 1,549,229 + +0.1 1,549,229 + +0.2 1,549,230 - +1.0
Or see this region's nucleotide sequence