Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04050 and ABID97_RS04055 are separated by 73 nucleotides ABID97_RS04055 and ABID97_RS04060 are separated by 204 nucleotides
ABID97_RS04050: ABID97_RS04050 - ABC transporter permease, at 830,587 to 831,447
_RS04050
ABID97_RS04055: ABID97_RS04055 - ABC transporter ATP-binding protein, at 831,521 to 832,609
_RS04055
ABID97_RS04060: ABID97_RS04060 - IclR family transcriptional regulator, at 832,814 to 833,672
_RS04060
Position (kb) 831
832
833 Strain fitness (log2 ratio) -2
-1
0
1
2 at 830.553 kb on + strand at 830.607 kb on - strand at 830.630 kb on + strand at 830.631 kb on - strand at 830.720 kb on + strand, within ABID97_RS04050 at 830.999 kb on + strand, within ABID97_RS04050 at 830.999 kb on + strand, within ABID97_RS04050 at 831.174 kb on - strand, within ABID97_RS04050 at 831.254 kb on + strand, within ABID97_RS04050 at 831.258 kb on - strand, within ABID97_RS04050 at 831.281 kb on + strand, within ABID97_RS04050 at 831.329 kb on + strand, within ABID97_RS04050 at 831.330 kb on - strand, within ABID97_RS04050 at 831.945 kb on + strand, within ABID97_RS04055 at 831.945 kb on + strand, within ABID97_RS04055 at 831.945 kb on + strand, within ABID97_RS04055 at 831.945 kb on + strand, within ABID97_RS04055 at 831.946 kb on - strand, within ABID97_RS04055 at 832.360 kb on - strand, within ABID97_RS04055 at 832.573 kb on - strand at 832.598 kb on + strand at 832.692 kb on + strand at 832.723 kb on + strand at 832.744 kb on + strand at 832.771 kb on - strand at 833.329 kb on - strand, within ABID97_RS04060 at 833.337 kb on + strand, within ABID97_RS04060 at 833.338 kb on - strand, within ABID97_RS04060 at 833.338 kb on - strand, within ABID97_RS04060 at 833.349 kb on + strand, within ABID97_RS04060 at 833.350 kb on - strand, within ABID97_RS04060 at 833.350 kb on - strand, within ABID97_RS04060 at 833.350 kb on - strand, within ABID97_RS04060
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 830,553 + -2.4 830,607 - -0.5 830,630 + -1.3 830,631 - -0.3 830,720 + ABID97_RS04050 0.15 -1.8 830,999 + ABID97_RS04050 0.48 -0.2 830,999 + ABID97_RS04050 0.48 -0.0 831,174 - ABID97_RS04050 0.68 -1.7 831,254 + ABID97_RS04050 0.77 -1.0 831,258 - ABID97_RS04050 0.78 +0.2 831,281 + ABID97_RS04050 0.81 -1.2 831,329 + ABID97_RS04050 0.86 +1.5 831,330 - ABID97_RS04050 0.86 +1.7 831,945 + ABID97_RS04055 0.39 -1.0 831,945 + ABID97_RS04055 0.39 -1.3 831,945 + ABID97_RS04055 0.39 -0.5 831,945 + ABID97_RS04055 0.39 -2.0 831,946 - ABID97_RS04055 0.39 -1.5 832,360 - ABID97_RS04055 0.77 +0.1 832,573 - +1.9 832,598 + +2.3 832,692 + -1.3 832,723 + +1.6 832,744 + -1.0 832,771 - -0.5 833,329 - ABID97_RS04060 0.60 -1.0 833,337 + ABID97_RS04060 0.61 -0.4 833,338 - ABID97_RS04060 0.61 +0.2 833,338 - ABID97_RS04060 0.61 -0.6 833,349 + ABID97_RS04060 0.62 +1.3 833,350 - ABID97_RS04060 0.62 -0.8 833,350 - ABID97_RS04060 0.62 -0.7 833,350 - ABID97_RS04060 0.62 +0.4
Or see this region's nucleotide sequence