Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03045 and ABID97_RS03050 are separated by 16 nucleotides ABID97_RS03050 and ABID97_RS03055 are separated by 28 nucleotides ABID97_RS03055 and ABID97_RS03060 are separated by 105 nucleotides
ABID97_RS03045: ABID97_RS03045 - Crp/Fnr family transcriptional regulator, at 617,777 to 618,484
_RS03045
ABID97_RS03050: ABID97_RS03050 - 4-oxalocrotonate tautomerase family protein, at 618,501 to 618,725
_RS03050
ABID97_RS03055: ABID97_RS03055 - SDR family oxidoreductase, at 618,754 to 619,500
_RS03055
ABID97_RS03060: ABID97_RS03060 - LysR substrate-binding domain-containing protein, at 619,606 to 620,517
_RS03060
Position (kb) 618
619
620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 618.230 kb on + strand, within ABID97_RS03045 at 618.230 kb on + strand, within ABID97_RS03045 at 618.230 kb on + strand, within ABID97_RS03045 at 618.230 kb on + strand, within ABID97_RS03045 at 618.230 kb on + strand, within ABID97_RS03045 at 618.231 kb on - strand, within ABID97_RS03045 at 618.231 kb on - strand, within ABID97_RS03045 at 618.231 kb on - strand, within ABID97_RS03045 at 618.432 kb on - strand at 618.432 kb on - strand at 618.432 kb on - strand at 618.827 kb on + strand at 618.827 kb on + strand at 618.828 kb on - strand at 618.914 kb on + strand, within ABID97_RS03055 at 619.139 kb on + strand, within ABID97_RS03055 at 619.139 kb on + strand, within ABID97_RS03055 at 619.194 kb on - strand, within ABID97_RS03055 at 619.418 kb on + strand, within ABID97_RS03055 at 619.418 kb on + strand, within ABID97_RS03055 at 619.419 kb on - strand, within ABID97_RS03055 at 619.419 kb on - strand, within ABID97_RS03055 at 619.538 kb on + strand at 619.538 kb on + strand at 619.539 kb on - strand at 619.568 kb on - strand at 619.816 kb on + strand, within ABID97_RS03060 at 619.816 kb on + strand, within ABID97_RS03060 at 619.816 kb on + strand, within ABID97_RS03060 at 619.817 kb on - strand, within ABID97_RS03060 at 619.928 kb on - strand, within ABID97_RS03060 at 619.928 kb on - strand, within ABID97_RS03060 at 619.928 kb on - strand, within ABID97_RS03060 at 620.134 kb on + strand, within ABID97_RS03060 at 620.135 kb on - strand, within ABID97_RS03060 at 620.281 kb on + strand, within ABID97_RS03060 at 620.282 kb on - strand, within ABID97_RS03060 at 620.282 kb on - strand, within ABID97_RS03060 at 620.431 kb on + strand at 620.431 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 618,230 + ABID97_RS03045 0.64 +1.1 618,230 + ABID97_RS03045 0.64 +1.2 618,230 + ABID97_RS03045 0.64 +3.8 618,230 + ABID97_RS03045 0.64 -0.5 618,230 + ABID97_RS03045 0.64 +0.5 618,231 - ABID97_RS03045 0.64 -0.4 618,231 - ABID97_RS03045 0.64 -0.5 618,231 - ABID97_RS03045 0.64 -1.3 618,432 - -0.6 618,432 - -0.6 618,432 - +0.4 618,827 + -0.0 618,827 + -0.2 618,828 - -0.5 618,914 + ABID97_RS03055 0.21 -0.7 619,139 + ABID97_RS03055 0.52 +0.1 619,139 + ABID97_RS03055 0.52 -0.1 619,194 - ABID97_RS03055 0.59 -0.6 619,418 + ABID97_RS03055 0.89 +0.8 619,418 + ABID97_RS03055 0.89 +1.8 619,419 - ABID97_RS03055 0.89 +0.0 619,419 - ABID97_RS03055 0.89 +0.9 619,538 + +0.4 619,538 + -0.9 619,539 - -0.8 619,568 - +3.2 619,816 + ABID97_RS03060 0.23 -3.7 619,816 + ABID97_RS03060 0.23 -0.4 619,816 + ABID97_RS03060 0.23 +0.3 619,817 - ABID97_RS03060 0.23 +0.6 619,928 - ABID97_RS03060 0.35 -1.4 619,928 - ABID97_RS03060 0.35 +2.2 619,928 - ABID97_RS03060 0.35 +0.2 620,134 + ABID97_RS03060 0.58 -0.2 620,135 - ABID97_RS03060 0.58 -0.9 620,281 + ABID97_RS03060 0.74 -1.4 620,282 - ABID97_RS03060 0.74 -0.2 620,282 - ABID97_RS03060 0.74 -0.3 620,431 + -2.6 620,431 + -1.5
Or see this region's nucleotide sequence